RNA id: TU812047


Basic Information

Item Value
RNA id TU812047
length 3172
lncRNA type antisense_over
GC content 0.38
exon number 1
gene id G714429
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 47193357 ~ 47196528 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAATGTAGCTAAAGCCAAAGCACTTGAACCATGATTGTTTCCTAAGAAAATATATGGATATATTTGTATGTAATATATTTTCTTTCTTCTTTATTTGTCACTCATGCTATACTATTTGCAGTTAATTATCCCAAAGCAATGTtttttggtttaaaaaaacaacaaccttttcctccccaatttcgttgCAAAGCTAGCATCCAGAAATATGCTAAAATATTTGTGGCATCTTATGCTCTCTCACATTGTATTTTGAGTGGAAAGATGAGATGACCTGGTGAACTTGACAAAGcacacaaactgaaaactgtAACAACAGCAAGCAAATCTGCAAAGGAGGCAATTTGGACCACATGATGACAACAAACACATACATGGCAGCCACTGCTCTTCCTTTGCAGTGATTCAACGAGACACAGTCTTCCTACTACACACTTTTGAAATACTTGCAAACAACTGTAATTTTTCAGTGCACCGGTATGATGTTTAACTTTCTGGTAGAAAGTAAACATAATCTCAATAACGTGTATTATGACTGTGTATGTTACAACACATTCAGTGACATTTTAAGATGGAAACAGCTGTAATTAATGGACTATCCTCATTGGCTTTATAGACATGATTAGCTACTGGGGCCCAAAAATATGTGCATACTTAAAAATACCTTAATTTGTATTGAATAGAATGTCTCCTACTTTTGTTTACCTGTACATTAAAGccgacatactgtacatactgttgtTCAGACAGTTAAACCAAGACTATACAACTAGGAGTGCACAACAGTGAAAATCAAGTAAATCGTGGTATGTAGTGTATTCAGGTATGAAAGACTATGTAGGTAATGGGACCAAACATCTTTAACATGTTTGGAGAAGCACAATGGTGAGATCTAAGCAGCATGTGATCGGTAGAAAGCGACTTACAGTATGTGCTCTTCAAATAATATGTGGTTTGTCATTCCCACAGgataggattttttatttattattgacACCTTTTGCCAAATTAATTAATGAAGGCTTCTCCTGTGTATCATCCCAAATACACACAATTGGGTACTGTAGTGCTACTTTATTGCTAGGGTTGTATTCATTCAATTGCAAATAATGAATCAATTTGAATAAGGGCTGCTTTTAAACAACAGTGTCAAATCTGGTTACCACCTACACGTACAAAACGTTATGTTACCCAGAGGTGGATCCATATCCTGTATAAAACATTCCAATTCCAATTGACTTTAGTCCAGTACAATATGTCTAACTTGTATCGTACCTCAAATTGCTTAAATTCAAGTGTGGCAAATAGCTTGTGACTGTGatagttgagatgactaaactaaactaaactaattttgtcgcaccttgactactgttcagtcgtgtggtcaggtgccacaaaaaaggactgaGGAAAATTGCaactggctcagaacagggcagcacgactGACCCCtcgatgtacacagagagctaatattagtAATATGCaggtcaatctctcctggctgaaagtggagaggagattgacttcatcactacttgtatttgtgagaggtattgacatgttgaacgcaccgagctgtctgtctaaacttctggcacacagctcggacacccatacataccccacaagacatgccacaagaggtctcttcacagtccccacgtccagaacagactatgggaggaccacattactacatagagccatgactacctggaactctattccacatcaagtaattgactcaagcagtaaaattaggtttaaaaagacaaaaaaacaccttatggaacagcagggactgtgaagcaacacaaacattggcacagacacacgcatgtatgcacacacacgataacatacgcactatacatacacatggatttagtactgtagatatgtggtagtggtggagaaggggcctgagggcacgcagtgtgttgtgaaatctgtgaatgtattgtaatgttttttttttacaattgtataaactgcctttattttgctggaccccaggaagagcagctgctgcattggcagcagctaatggggatccataataaatgcaAATACCATTCAAACCATATTATACATAAAGTTATAATGGTGTCACAGTCACATGCTATTTGCCCAAAGAGAGTTGGACAggccccacaaacacacactgcaaaTAATTGGTTCTATAATGCAAAGCTCTATAATGCAAATATTTTCTACTCATGTATTTAAGCAATTTGAGGTACAGTACAAGTTAAACATATTGTATTGGTCTAAAGGCAATTGGAATTGTGCACAGAAACCCTCCTCATTGAAAACAACAATTAACTGAGCGTGGCCTAGTTGCCCTTTTGATGGGGAACCATTAGATTTATCAGGTTTTTGTTGCTTTTACTTCTGTCAGTGTGCATTATAGTAAGTGCTTCTCAGTGAAGCTACAACATTAATTAAATGAATTTGCCATACTGGAGGGCCATGTAAAATCATGTGAATTGAGAACCATGTAGTGTACATTTTACCCACTCTTGAATGAAACATGTACCATAGTAGTAATAAATATGTAACATTCAAAAGACTACTGCAATGATACGCCTAACCGTGGGAACTAGACTGAATggtaaatgtttgtctatgaCTATGTTGTACATGTATATATTCATCAGTACAATGTGATAAGATGTATACTACATCTGTACTGATCCTATCGTATTAAAGTGCTTCTTCTTAGGTCATGACCTCAGAGGATGTGGTTTCTGCTAAAAGCCCAATTCCGATGCACACTTTGCGCAGAAGGTGGAGACttggaatagggctctagtctttGACACATAGCAATTCAAACTCCATCCAGGACAAATCCACCTTCCAAAAAGCAATATAGTGAAAATAGACACAAAAAAATATGATTTGGGAGTTGGGACCCTAAAAAGCTTTCAAgacaattacatttaaaaaaatgagtaaaacatttcaaaCCATCAGTGGTGCGTTATAAAATATCAGGTGAACAAACAAAGGATTTGGTGGGTTTGGAGCAACTTCCTGGAGTATACTGTAGGGCTAGGGTGTATTGTGGTTGGCAGAATGTCCATCACGTTGGCACCATCTCTGTGTACTcatcctgtccctccctctcatcaAACTTAGGTTCTGTGTCATCTGCATCCA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU812046 lncRNA downstream 1395 47191334 ~ 47191962 (-) True G714428
TU812042 lncRNA downstream 15410 47177719 ~ 47177947 (-) True G714424
TU812041 lncRNA downstream 16335 47176799 ~ 47177022 (-) True G714423
TU812040 lncRNA downstream 19349 47172988 ~ 47174008 (-) True G714422
TU812039 lncRNA downstream 20485 47172609 ~ 47172872 (-) True G714421
TU812048 lncRNA upstream 1128 47197656 ~ 47198344 (-) True G714430
TU812053 lncRNA upstream 6124 47202652 ~ 47202881 (-) True G714435
TU812058 lncRNA upstream 11451 47207979 ~ 47208345 (-) True G714440
TU812331 lncRNA upstream 32239 47228767 ~ 47229293 (-) True G714689
TU812329 lncRNA upstream 33597 47230125 ~ 47233488 (-) True LOC110529976
XM_021612672.2 mRNA downstream 125384 47051073 ~ 47067973 (-) False LOC110529973
XM_021612673.2 mRNA downstream 135650 47051073 ~ 47057707 (-) False LOC110529973
XM_021612670.2 mRNA downstream 157995 47027194 ~ 47035362 (-) True dnajc1
XM_021612671.2 mRNA downstream 166282 47015885 ~ 47027075 (-) False nebl
XM_021612689.2 mRNA upstream 33559 47230087 ~ 47260839 (-) False LOC110529976
XM_021612686.2 mRNA upstream 33559 47230087 ~ 47260840 (-) False LOC110529976
XM_021612688.2 mRNA upstream 33559 47230087 ~ 47260840 (-) False LOC110529976
XM_021612685.2 mRNA upstream 33559 47230087 ~ 47260844 (-) False LOC110529976
XM_021612687.2 mRNA upstream 33559 47230087 ~ 47260844 (-) False LOC110529976
TU812043 other downstream 14621 47178424 ~ 47178736 (-) True G714425
TU811888 other downstream 135697 47051467 ~ 47057660 (-) True LOC110529973
TU811283 other downstream 867676 46311130 ~ 46325681 (-) True crfb16
TU810338 other downstream 1735109 45457777 ~ 45458248 (-) True G712814
TU808567 other downstream 2653853 44538793 ~ 44539504 (-) True G711133
TU813564 other upstream 1092414 48288942 ~ 48289581 (-) True G715865
TU813956 other upstream 1345763 48542291 ~ 48616523 (-) True dlg1l
TU814203 other upstream 1563384 48759912 ~ 48761163 (-) True G716463
TU814220 other upstream 1585593 48782121 ~ 48782515 (-) True G716480
TU814229 other upstream 1591993 48788521 ~ 48788962 (-) True G716488

Expression Profile