RNA id: TU812473



Basic Information


Item Value
RNA id TU812473
length 392
lncRNA type antisense_over
GC content 0.44
exon number 1
gene id G714816
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 47451457 ~ 47451848 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gcagcagactttgtgaaaattaatatttgtgtcagtctcaaaacttttggccgcGGGTGTAGTGTCCAAATACGCATTTCCAAACGCTCCGATTGGTTGGGAATAGCAGCGTTATAATGGGTGAGGGATAACTAAGGTAGGCTGAACAGCCAAACTAATGGGACTTAAGGGACTGTGAGGGAAAGTCaggtagagaggaggaacaggacaGATTATTTTACAGGCCTACTGCATAGAAAATGTATGTTtgggaaagtggaggagagaaagTGCATTGGTGTGACTACTTTTGGCTGGTTATGATAACATTGTCGCACTGATGCATTGCAAATGGTGGCACAGGACATACAGAGATGAACACAGTGAAAAAGCAGACCCAATGGAATTGACAA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU812411 lncRNA downstream 62970 47352193 ~ 47388487 (-) True G714764
TU812329 lncRNA downstream 217969 47230125 ~ 47233488 (-) True LOC110529976
TU812331 lncRNA downstream 222164 47228767 ~ 47229293 (-) True G714689
TU812058 lncRNA downstream 243112 47207979 ~ 47208345 (-) True G714440
TU812053 lncRNA downstream 248576 47202652 ~ 47202881 (-) True G714435
TU812480 lncRNA upstream 13977 47465825 ~ 47466150 (-) True G714823
TU812512 lncRNA upstream 69932 47521780 ~ 47522040 (-) True G714855
TU812533 lncRNA upstream 81151 47532999 ~ 47533347 (-) True G714876
TU812708 lncRNA upstream 216121 47667969 ~ 47673891 (-) True G715048
TU812739 lncRNA upstream 245739 47697587 ~ 47697872 (-) True G715079
XM_021612696.2 mRNA downstream 11515 47397783 ~ 47439942 (-) False LOC110529981
XM_021612697.2 mRNA downstream 11515 47397783 ~ 47439942 (-) False LOC110529981
XR_005052883.1 mRNA downstream 11515 47397783 ~ 47439942 (-) False LOC110529981
XR_005052884.1 mRNA downstream 11515 47397783 ~ 47439942 (-) False LOC110529981
XR_005052885.1 mRNA downstream 11515 47397783 ~ 47439942 (-) False LOC110529981
XR_002474329.2 mRNA upstream 203204 47655052 ~ 47656068 (-) True LOC110529117
XM_021612703.2 mRNA upstream 274942 47726790 ~ 47894176 (-) False LOC110529987
XM_021612708.2 mRNA upstream 877836 48329684 ~ 48343010 (-) True LOC110529989
XM_036985531.1 mRNA upstream 904156 48356004 ~ 48429216 (-) False dlg1l
XM_036985532.1 mRNA upstream 904156 48356004 ~ 48429216 (-) False dlg1l
TU812043 other downstream 272721 47178424 ~ 47178736 (-) True G714425
TU811888 other downstream 393797 47051467 ~ 47057660 (-) True LOC110529973
TU811283 other downstream 1125776 46311130 ~ 46325681 (-) True crfb16
TU810338 other downstream 1993209 45457777 ~ 45458248 (-) True G712814
TU808567 other downstream 2911953 44538793 ~ 44539504 (-) True G711133
TU813564 other upstream 837094 48288942 ~ 48289581 (-) True G715865
TU813956 other upstream 1090443 48542291 ~ 48616523 (-) True dlg1l
TU814203 other upstream 1308064 48759912 ~ 48761163 (-) True G716463
TU814220 other upstream 1330273 48782121 ~ 48782515 (-) True G716480
TU814229 other upstream 1336673 48788521 ~ 48788962 (-) True G716488

Expression Profile


TU812473 Expression in all Baseline Samples

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TU812473 Expression in each Bioproject

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TU812473 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 10.
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