RNA id: TCONS_00035700


Basic Information

Item Value
RNA id TCONS_00035700
length 797
RNA type mRNA
GC content 0.49
exon number 10
gene id XLOC_018111
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 26572456 ~ 26624042 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTCCAAGCGATCGGTGCGCTCTCTCAATCTCCAGCCTGGGATCAAAAGAAAGGGCATGATTGAGGAGGTGACCCGTCGCCTGGTGCAGTTGGTTCGAGGTGCTCTGTTACCCTCTTCTCTTACTGAGCTCCAGCTGAGGCAGTATGGAGGCTGGGACACCAAAACTCCGCTCACTGGAGCTTGGCTCACACAGGTCATCCACACCGTCAGGTTGAGTCATGAGGCTCTGTCGGCTCTGGAGATTCCCAATGACCTGCTGCAGGTGATTCAGGATTTACTGCAGGACCTGCGTGTGCACTGCCTGCTGACCACACTACAGCACACTGAAGAGGATGTAAAGAGACTTGCTGAAAAAGAAGATTGGGTTGTGGACAATGAAGGAATCACATCACTGccgGCCCAGTTTGAGCAGTGTATGGTTCAAATGCTGCAGTCTCTGAAGGAGCCCATGGAGTGTAAACCTGGAGAGATCAATATCTTCAATCTTGATGTGGTTCAAGACAAAGCGTGTGAACAGTGTGTTTCTATTATGAAGGTCTTCATTAAGTGCCTTGAGCAGCTCAGCACCAAGACTGATGAAGACATCAACACCTCTCATTTATCTGTGGATTTGACTTCACCTGATCTTTTTGGAAGCATAAAGGAAGACTTTAGTTCAAAACCTGAACAGCGTCTTCTCATCATTCTCAGTAACTGTCAGTATCTGGAGAGACACACATTCCTCAATCTagcagagcacctggagaagAATGGCTTCACCATGGCAGACAAGATCATTAGGGTCAGCATAGATGCG

Function

GO:

id name namespace
GO:0006887 exocytosis biological_process
GO:0006893 Golgi to plasma membrane transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0000145 exocyst cellular_component

KEGG:

id description
ko04014 Ras signaling pathway
ko05132 Salmonella infection
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-040426-1160 Predicted to be involved in Golgi to plasma membrane transport and exocytosis. Predicted to act upstream of or within protein transport. Predicted to be part of exocyst. Orthologous to human EXOC2 (exocyst complex component 2).

Ensembl:

ensembl_id ENSDART00000134337

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036845 lncRNA downstream 25140 26548237 ~ 26551233 (-) False XLOC_018110
TCONS_00035697 lncRNA downstream 25570 26548237 ~ 26550803 (-) False XLOC_018110
TCONS_00035696 lncRNA downstream 25613 26544250 ~ 26550760 (-) False XLOC_018110
TCONS_00036844 lncRNA downstream 53159 26480062 ~ 26523214 (-) False XLOC_018108
TCONS_00036843 lncRNA downstream 117992 26445903 ~ 26458381 (-) True XLOC_018107
TCONS_00036846 lncRNA upstream 42334 26631070 ~ 26708482 (-) False XLOC_018112
TCONS_00036847 lncRNA upstream 42334 26631070 ~ 26708526 (-) True XLOC_018112
TCONS_00036848 lncRNA upstream 343332 26932068 ~ 26935771 (-) False XLOC_018115
TCONS_00035712 lncRNA upstream 346266 26935002 ~ 26935771 (-) True XLOC_018115
TCONS_00035713 lncRNA upstream 370797 26959533 ~ 26962756 (-) True XLOC_018116
TCONS_00035695 mRNA downstream 25163 26543683 ~ 26551210 (-) False XLOC_018110
TCONS_00035693 mRNA downstream 39202 26535342 ~ 26537171 (-) False XLOC_018109
TCONS_00035694 mRNA downstream 39792 26535700 ~ 26536581 (-) True XLOC_018109
TCONS_00035692 mRNA downstream 44523 26525249 ~ 26531850 (-) True XLOC_018108
TCONS_00035689 mRNA downstream 84806 26480288 ~ 26491567 (-) False XLOC_018108
TCONS_00035702 mRNA upstream 120273 26709009 ~ 26822550 (-) False XLOC_018113
TCONS_00035703 mRNA upstream 120275 26709011 ~ 26822550 (-) False XLOC_018113
TCONS_00035704 mRNA upstream 187076 26775812 ~ 26822522 (-) False XLOC_018113
TCONS_00035705 mRNA upstream 218573 26807309 ~ 26822550 (-) True XLOC_018113
TCONS_00035706 mRNA upstream 238529 26827265 ~ 26846028 (-) False XLOC_018114
TCONS_00035698 other downstream 25140 26550661 ~ 26551233 (-) True XLOC_018110
TCONS_00035691 other downstream 65100 26502486 ~ 26511273 (-) False XLOC_018108
TCONS_00035690 other downstream 87428 26480428 ~ 26488945 (-) False XLOC_018108
TCONS_00035681 other downstream 184416 26390795 ~ 26391957 (-) True XLOC_018105
TCONS_00035675 other downstream 381532 26194726 ~ 26194841 (-) True XLOC_018103
TCONS_00035715 other upstream 465359 27054095 ~ 27054220 (-) True XLOC_018118
TCONS_00035722 other upstream 636076 27224812 ~ 27225878 (-) True XLOC_018121
TCONS_00035726 other upstream 719680 27308416 ~ 27311615 (-) True XLOC_018122
TCONS_00035747 other upstream 2022536 28611272 ~ 28612322 (-) True XLOC_018136
TCONS_00035753 other upstream 2244026 28832762 ~ 28842571 (-) False XLOC_018139

Expression Profile

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