RNA id: TU812746



Basic Information


Item Value
RNA id TU812746
length 252
lncRNA type inter_gene
GC content 0.59
exon number 1
gene id G715083
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 47704219 ~ 47704470 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCTGTGTGACACGGGGGAGCGGTCCATgaatcccactcccatactcccgttTTCTTGTTGggtggcgccggtagtgtgggagctggacgtggACATTGAGAGGACGTCATGTGCAGAGCCCTCtccccctcagtgtccagctgggcatTTGTACGTTCCatctgctgtccgcgaccgacTGATATATTGggccacacgtcaccctcctctgggcatcctgggataggtcggacggTGTTCTGTCTtgatggg

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU812739 lncRNA downstream 6347 47697587 ~ 47697872 (-) True G715079
TU812708 lncRNA downstream 30328 47667969 ~ 47673891 (-) True G715048
TU812533 lncRNA downstream 170872 47532999 ~ 47533347 (-) True G714876
TU812512 lncRNA downstream 182179 47521780 ~ 47522040 (-) True G714855
TU812480 lncRNA downstream 238069 47465825 ~ 47466150 (-) True G714823
TU812750 lncRNA upstream 2883 47707353 ~ 47707584 (-) True G715087
TU812751 lncRNA upstream 3177 47707647 ~ 47707953 (-) True G715088
TU812758 lncRNA upstream 10112 47714582 ~ 47714783 (-) True G715095
TU812768 lncRNA upstream 15280 47719750 ~ 47720233 (-) True G715105
TU812770 lncRNA upstream 16344 47720814 ~ 47721174 (-) True G715107
XR_002474329.2 mRNA downstream 48151 47655052 ~ 47656068 (-) True LOC110529117
XR_005052884.1 mRNA downstream 264277 47397783 ~ 47439942 (-) False LOC110529981
XM_021612703.2 mRNA upstream 22320 47726790 ~ 47894176 (-) False LOC110529987
XM_021612708.2 mRNA upstream 625214 48329684 ~ 48343010 (-) True LOC110529989
XM_036985531.1 mRNA upstream 651534 48356004 ~ 48429216 (-) False dlg1l
XM_036985532.1 mRNA upstream 651534 48356004 ~ 48429216 (-) False dlg1l
XM_021612717.2 mRNA upstream 651534 48356004 ~ 48486048 (-) False dlg1l
TU812043 other downstream 525483 47178424 ~ 47178736 (-) True G714425
TU811888 other downstream 646559 47051467 ~ 47057660 (-) True LOC110529973
TU811283 other downstream 1378538 46311130 ~ 46325681 (-) True crfb16
TU810338 other downstream 2245971 45457777 ~ 45458248 (-) True G712814
TU808567 other downstream 3164715 44538793 ~ 44539504 (-) True G711133
TU813564 other upstream 584472 48288942 ~ 48289581 (-) True G715865
TU813956 other upstream 837821 48542291 ~ 48616523 (-) True dlg1l
TU814203 other upstream 1055442 48759912 ~ 48761163 (-) True G716463
TU814220 other upstream 1077651 48782121 ~ 48782515 (-) True G716480
TU814229 other upstream 1084051 48788521 ~ 48788962 (-) True G716488

Expression Profile


TU812746 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 2.
End of interactive chart.

TU812746 Expression in each Bioproject

Bar chart with 9 bars.
TU812746 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20.
End of interactive chart.