RNA id: TU812770



Basic Information


Item Value
RNA id TU812770
length 361
lncRNA type inter_gene
GC content 0.58
exon number 1
gene id G715107
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 47720814 ~ 47721174 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


agtaccctccaagctcgtcatcaagctcgagaccctgggtctcgaccccgccctgtgcaactgggtactggacttcctgacgggccgcccccaggtggtgagggtaggcaacaacatctcctccccgctgatcctcaacactggggccccacaagggtgcgttctgagccctctcctgtactccctgttcacccacgactgcgtggccacgcacgcctccaactcaatcatcaagtttgcggacgacacaacagtggtaggcttgattaccaacaatgatgagacggcctacagggaggaggtgagggccctcggagtgtggtgtcaggaaaataacctcacactcaacgtcaacaaaact

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU812768 lncRNA downstream 581 47719750 ~ 47720233 (-) True G715105
TU812758 lncRNA downstream 6031 47714582 ~ 47714783 (-) True G715095
TU812751 lncRNA downstream 12861 47707647 ~ 47707953 (-) True G715088
TU812750 lncRNA downstream 13230 47707353 ~ 47707584 (-) True G715087
TU812746 lncRNA downstream 16344 47704219 ~ 47704470 (-) True G715083
TU812773 lncRNA upstream 895 47722069 ~ 47722312 (-) True G715110
TU812774 lncRNA upstream 1385 47722559 ~ 47722797 (-) True G715111
TU812778 lncRNA upstream 3860 47725034 ~ 47725335 (-) True G715115
TU812942 lncRNA upstream 5897 47727071 ~ 47728355 (-) False LOC110529987
TU812943 lncRNA upstream 8792 47729966 ~ 47730419 (-) True LOC110529987
XR_002474329.2 mRNA downstream 64746 47655052 ~ 47656068 (-) True LOC110529117
XR_005052884.1 mRNA downstream 280872 47397783 ~ 47439942 (-) False LOC110529981
XM_021612703.2 mRNA upstream 5616 47726790 ~ 47894176 (-) False LOC110529987
XM_021612708.2 mRNA upstream 608510 48329684 ~ 48343010 (-) True LOC110529989
XM_036985531.1 mRNA upstream 634830 48356004 ~ 48429216 (-) False dlg1l
XM_036985532.1 mRNA upstream 634830 48356004 ~ 48429216 (-) False dlg1l
XM_021612717.2 mRNA upstream 634830 48356004 ~ 48486048 (-) False dlg1l
TU812043 other downstream 542078 47178424 ~ 47178736 (-) True G714425
TU811888 other downstream 663154 47051467 ~ 47057660 (-) True LOC110529973
TU811283 other downstream 1395133 46311130 ~ 46325681 (-) True crfb16
TU810338 other downstream 2262566 45457777 ~ 45458248 (-) True G712814
TU808567 other downstream 3181310 44538793 ~ 44539504 (-) True G711133
TU813564 other upstream 567768 48288942 ~ 48289581 (-) True G715865
TU813956 other upstream 821117 48542291 ~ 48616523 (-) True dlg1l
TU814203 other upstream 1038738 48759912 ~ 48761163 (-) True G716463
TU814220 other upstream 1060947 48782121 ~ 48782515 (-) True G716480
TU814229 other upstream 1067347 48788521 ~ 48788962 (-) True G716488

Expression Profile


TU812770 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 5.
End of interactive chart.

TU812770 Expression in each Bioproject

Bar chart with 17 bars.
TU812770 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
End of interactive chart.