RNA id: TU812773


Basic Information

Item Value
RNA id TU812773
length 244
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G715110
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 47722069 ~ 47722312 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gattttttatgaatttatttgcaaatgatggtggaaaataagtatttggtcaataacaaaagctaatctcaatactttgttatatacacttTGTTGGCACTGACAGAGGTTAAACGTTTTCtgaaagtcttcacaaggttttcacacactgttgctggtattttggcccattcctacatgcagatctcctctagagcagtgatgttttggggctgttgctgggcaacacggactttcaactccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU812770 lncRNA downstream 895 47720814 ~ 47721174 (-) True G715107
TU812768 lncRNA downstream 1836 47719750 ~ 47720233 (-) True G715105
TU812758 lncRNA downstream 7286 47714582 ~ 47714783 (-) True G715095
TU812751 lncRNA downstream 14116 47707647 ~ 47707953 (-) True G715088
TU812750 lncRNA downstream 14485 47707353 ~ 47707584 (-) True G715087
TU812774 lncRNA upstream 247 47722559 ~ 47722797 (-) True G715111
TU812778 lncRNA upstream 2722 47725034 ~ 47725335 (-) True G715115
TU812942 lncRNA upstream 4759 47727071 ~ 47728355 (-) False LOC110529987
TU812943 lncRNA upstream 7654 47729966 ~ 47730419 (-) True LOC110529987
TU812960 lncRNA upstream 28768 47751080 ~ 47751725 (-) False G715292
XR_002474329.2 mRNA downstream 66001 47655052 ~ 47656068 (-) True LOC110529117
XR_005052884.1 mRNA downstream 282127 47397783 ~ 47439942 (-) False LOC110529981
XM_021612703.2 mRNA upstream 4478 47726790 ~ 47894176 (-) False LOC110529987
XM_021612708.2 mRNA upstream 607372 48329684 ~ 48343010 (-) True LOC110529989
XM_036985531.1 mRNA upstream 633692 48356004 ~ 48429216 (-) False dlg1l
XM_036985532.1 mRNA upstream 633692 48356004 ~ 48429216 (-) False dlg1l
XM_021612717.2 mRNA upstream 633692 48356004 ~ 48486048 (-) False dlg1l
TU812043 other downstream 543333 47178424 ~ 47178736 (-) True G714425
TU811888 other downstream 664409 47051467 ~ 47057660 (-) True LOC110529973
TU811283 other downstream 1396388 46311130 ~ 46325681 (-) True crfb16
TU810338 other downstream 2263821 45457777 ~ 45458248 (-) True G712814
TU808567 other downstream 3182565 44538793 ~ 44539504 (-) True G711133
TU813564 other upstream 566630 48288942 ~ 48289581 (-) True G715865
TU813956 other upstream 819979 48542291 ~ 48616523 (-) True dlg1l
TU814203 other upstream 1037600 48759912 ~ 48761163 (-) True G716463
TU814220 other upstream 1059809 48782121 ~ 48782515 (-) True G716480
TU814229 other upstream 1066209 48788521 ~ 48788962 (-) True G716488

Expression Profile