RNA id: TU813001


Basic Information

Item Value
RNA id TU813001
length 615
lncRNA type intronic
GC content 0.42
exon number 1
gene id G715330
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 47815325 ~ 47815939 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gatataaaactgtatattttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgaaatttattggatatttcaaacttttttaacaaatcaaaaactgaaaaattgggcgtgcaaaactattcagcccctttactttcagtgcagcaaactctctccagaagatcagtgaggatctctgaatgatccaatgtagacctaaatgactaatgatgataaatacaatccacctgtgtgtaatcaagtctccgtataaatgcacctgcactgtgatagtctcagaggtccgttaaaagcgcagagagcatcatgaagaacatggaacacaccaggcaggtccgagatactgttgtgaagaagtttaaagcccggatttggatacaaaaagatttcccaagctttaaacatcccaaggagcactgtgcaagcgataatattgaaatggaaggagtatcagaccactgcaaatctaccaagacctggccgtccctctaaactttcagctcatacaaggagaagactgatcagagatgcagccaagaggcccatgatcactctggatgaactgctgagatctacagctgaggtgggagactctgtccatagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU812960 lncRNA downstream 63600 47751080 ~ 47751725 (-) False G715292
TU812959 lncRNA downstream 63600 47751203 ~ 47751725 (-) True G715292
TU812943 lncRNA downstream 84906 47729966 ~ 47730419 (-) True LOC110529987
TU812942 lncRNA downstream 86970 47727071 ~ 47728355 (-) False LOC110529987
TU812778 lncRNA downstream 89990 47725034 ~ 47725335 (-) True G715115
TU813006 lncRNA upstream 7159 47823098 ~ 47823383 (-) True G715335
TU813012 lncRNA upstream 13241 47829180 ~ 47871114 (-) True G715340
TU813106 lncRNA upstream 143271 47959210 ~ 47959437 (-) True G715432
TU813112 lncRNA upstream 149465 47965404 ~ 47965620 (-) True G715438
TU813121 lncRNA upstream 158793 47974732 ~ 47974964 (-) True G715447
XR_002474329.2 mRNA downstream 159257 47655052 ~ 47656068 (-) True LOC110529117
XR_005052884.1 mRNA downstream 375383 47397783 ~ 47439942 (-) False LOC110529981
XM_021612708.2 mRNA upstream 513745 48329684 ~ 48343010 (-) True LOC110529989
XM_036985531.1 mRNA upstream 540065 48356004 ~ 48429216 (-) False dlg1l
XM_036985532.1 mRNA upstream 540065 48356004 ~ 48429216 (-) False dlg1l
XM_021612717.2 mRNA upstream 540065 48356004 ~ 48486048 (-) False dlg1l
XM_021612729.2 mRNA upstream 540065 48356004 ~ 48515295 (-) False dlg1l
TU812043 other downstream 636589 47178424 ~ 47178736 (-) True G714425
TU811888 other downstream 757665 47051467 ~ 47057660 (-) True LOC110529973
TU811283 other downstream 1489644 46311130 ~ 46325681 (-) True crfb16
TU810338 other downstream 2357077 45457777 ~ 45458248 (-) True G712814
TU808567 other downstream 3275821 44538793 ~ 44539504 (-) True G711133
TU813564 other upstream 473003 48288942 ~ 48289581 (-) True G715865
TU813956 other upstream 726352 48542291 ~ 48616523 (-) True dlg1l
TU814203 other upstream 943973 48759912 ~ 48761163 (-) True G716463
TU814220 other upstream 966182 48782121 ~ 48782515 (-) True G716480
TU814229 other upstream 972582 48788521 ~ 48788962 (-) True G716488

Expression Profile