RNA id: TU813112


Basic Information

Item Value
RNA id TU813112
length 217
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G715438
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 47965404 ~ 47965620 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggatagggttctcagggtgatgaggggttttgggtttgtgccagacatagcgttttccttgatggccaaaaagctacattttagtcttttttgaccagaataccttcttccatatgtttggggagtctcccacatgccttttggtgaacaccaaacatgtttgctaatttttttctttaagcaatggcttttttctggccactcttctgtattgccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU813106 lncRNA downstream 5967 47959210 ~ 47959437 (-) True G715432
TU813012 lncRNA downstream 94290 47829180 ~ 47871114 (-) True G715340
TU813006 lncRNA downstream 142021 47823098 ~ 47823383 (-) True G715335
TU813001 lncRNA downstream 149465 47815325 ~ 47815939 (-) True G715330
TU812960 lncRNA downstream 213679 47751080 ~ 47751725 (-) False G715292
TU813121 lncRNA upstream 9112 47974732 ~ 47974964 (-) True G715447
TU813141 lncRNA upstream 23406 47989026 ~ 47989364 (-) True G715467
TU813238 lncRNA upstream 91548 48057168 ~ 48057388 (-) True G715563
TU813240 lncRNA upstream 92807 48058427 ~ 48058664 (-) True G715565
TU813247 lncRNA upstream 100179 48065799 ~ 48066031 (-) True G715572
XM_021612703.2 mRNA downstream 71228 47726790 ~ 47894176 (-) False LOC110529987
XR_002474329.2 mRNA downstream 309336 47655052 ~ 47656068 (-) True LOC110529117
XR_005052885.1 mRNA downstream 525462 47397783 ~ 47439942 (-) False LOC110529981
XM_021612708.2 mRNA upstream 364064 48329684 ~ 48343010 (-) True LOC110529989
XM_036985531.1 mRNA upstream 390384 48356004 ~ 48429216 (-) False dlg1l
XM_036985532.1 mRNA upstream 390384 48356004 ~ 48429216 (-) False dlg1l
XM_021612717.2 mRNA upstream 390384 48356004 ~ 48486048 (-) False dlg1l
XM_021612729.2 mRNA upstream 390384 48356004 ~ 48515295 (-) False dlg1l
TU812043 other downstream 786668 47178424 ~ 47178736 (-) True G714425
TU811888 other downstream 907744 47051467 ~ 47057660 (-) True LOC110529973
TU811283 other downstream 1639723 46311130 ~ 46325681 (-) True crfb16
TU810338 other downstream 2507156 45457777 ~ 45458248 (-) True G712814
TU808567 other downstream 3425900 44538793 ~ 44539504 (-) True G711133
TU813564 other upstream 323322 48288942 ~ 48289581 (-) True G715865
TU813956 other upstream 576671 48542291 ~ 48616523 (-) True dlg1l
TU814203 other upstream 794292 48759912 ~ 48761163 (-) True G716463
TU814220 other upstream 816501 48782121 ~ 48782515 (-) True G716480
TU814229 other upstream 822901 48788521 ~ 48788962 (-) True G716488

Expression Profile