RNA id: TU813240


Basic Information

Item Value
RNA id TU813240
length 238
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G715565
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 48058427 ~ 48058664 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tccaagCTTACCTGTCATCCTGGTGCTCGTCGTACACTGGCTTTCCTCCGACAGAGCttctggtggcccaccatggCTCCTGATGTCTCGGCCTTTGTCGCCGCATGCATGGTGTGTGCCCAAAGCAAGACTCTGCGGCAAGCTCCGTCTGGTCTCCTTCAGCCACTTCCTTTTCCTCATCGCCCCTGGTCCCATATTTCCCTGCATTTTGTCACCGGGCTTCCTCCATCAGATGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU813238 lncRNA downstream 1039 48057168 ~ 48057388 (-) True G715563
TU813141 lncRNA downstream 69063 47989026 ~ 47989364 (-) True G715467
TU813121 lncRNA downstream 83463 47974732 ~ 47974964 (-) True G715447
TU813112 lncRNA downstream 92807 47965404 ~ 47965620 (-) True G715438
TU813106 lncRNA downstream 98990 47959210 ~ 47959437 (-) True G715432
TU813247 lncRNA upstream 7135 48065799 ~ 48066031 (-) True G715572
TU813253 lncRNA upstream 13307 48071971 ~ 48072304 (-) True G715578
TU813256 lncRNA upstream 15499 48074163 ~ 48074530 (-) True G715581
TU813260 lncRNA upstream 17206 48075870 ~ 48076171 (-) True G715585
TU813321 lncRNA upstream 53050 48111714 ~ 48113292 (-) True G715645
XM_021612703.2 mRNA downstream 164251 47726790 ~ 47894176 (-) False LOC110529987
XR_002474329.2 mRNA downstream 402359 47655052 ~ 47656068 (-) True LOC110529117
XR_005052885.1 mRNA downstream 618485 47397783 ~ 47439942 (-) False LOC110529981
XM_021612708.2 mRNA upstream 271020 48329684 ~ 48343010 (-) True LOC110529989
XM_036985531.1 mRNA upstream 297340 48356004 ~ 48429216 (-) False dlg1l
XM_036985532.1 mRNA upstream 297340 48356004 ~ 48429216 (-) False dlg1l
XM_021612717.2 mRNA upstream 297340 48356004 ~ 48486048 (-) False dlg1l
XM_021612729.2 mRNA upstream 297340 48356004 ~ 48515295 (-) False dlg1l
TU812043 other downstream 879691 47178424 ~ 47178736 (-) True G714425
TU811888 other downstream 1000767 47051467 ~ 47057660 (-) True LOC110529973
TU811283 other downstream 1732746 46311130 ~ 46325681 (-) True crfb16
TU810338 other downstream 2600179 45457777 ~ 45458248 (-) True G712814
TU808567 other downstream 3518923 44538793 ~ 44539504 (-) True G711133
TU813564 other upstream 230278 48288942 ~ 48289581 (-) True G715865
TU813956 other upstream 483627 48542291 ~ 48616523 (-) True dlg1l
TU814203 other upstream 701248 48759912 ~ 48761163 (-) True G716463
TU814220 other upstream 723457 48782121 ~ 48782515 (-) True G716480
TU814229 other upstream 729857 48788521 ~ 48788962 (-) True G716488

Expression Profile