RNA id: TU813253


Basic Information

Item Value
RNA id TU813253
length 334
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G715578
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 48071971 ~ 48072304 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggcttttgtccaacgttgcgagcgcacctggaagagggtcaggtctgcactttgccgttatagggcgcagactgtgagagctgctaataagcgtagaactaagagtcctagatattatcgcggtcagagagtttggctctccactcagaaccttccccttaagaccgcttcccgcaagttgaccccgcggttcattggtccgttccgtatttctcggatcattaatcctgtcgcagtgcgacttcttcttccgcgatatcttcgtcgcgtccacccggtcttccatgtctcctgtgtcaagcccgttcttcgcgcccccgctcgtcttcccccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU813247 lncRNA downstream 5940 48065799 ~ 48066031 (-) True G715572
TU813240 lncRNA downstream 13307 48058427 ~ 48058664 (-) True G715565
TU813238 lncRNA downstream 14583 48057168 ~ 48057388 (-) True G715563
TU813141 lncRNA downstream 82607 47989026 ~ 47989364 (-) True G715467
TU813121 lncRNA downstream 97007 47974732 ~ 47974964 (-) True G715447
TU813256 lncRNA upstream 1859 48074163 ~ 48074530 (-) True G715581
TU813260 lncRNA upstream 3566 48075870 ~ 48076171 (-) True G715585
TU813321 lncRNA upstream 39410 48111714 ~ 48113292 (-) True G715645
TU813301 lncRNA upstream 47011 48119315 ~ 48120151 (-) True G715625
TU813395 lncRNA upstream 91426 48163730 ~ 48164225 (-) True G715717
XM_021612703.2 mRNA downstream 177795 47726790 ~ 47894176 (-) False LOC110529987
XR_002474329.2 mRNA downstream 415903 47655052 ~ 47656068 (-) True LOC110529117
XR_005052885.1 mRNA downstream 632029 47397783 ~ 47439942 (-) False LOC110529981
XM_021612708.2 mRNA upstream 257380 48329684 ~ 48343010 (-) True LOC110529989
XM_036985531.1 mRNA upstream 283700 48356004 ~ 48429216 (-) False dlg1l
XM_036985532.1 mRNA upstream 283700 48356004 ~ 48429216 (-) False dlg1l
XM_021612717.2 mRNA upstream 283700 48356004 ~ 48486048 (-) False dlg1l
XM_021612729.2 mRNA upstream 283700 48356004 ~ 48515295 (-) False dlg1l
TU812043 other downstream 893235 47178424 ~ 47178736 (-) True G714425
TU811888 other downstream 1014311 47051467 ~ 47057660 (-) True LOC110529973
TU811283 other downstream 1746290 46311130 ~ 46325681 (-) True crfb16
TU810338 other downstream 2613723 45457777 ~ 45458248 (-) True G712814
TU808567 other downstream 3532467 44538793 ~ 44539504 (-) True G711133
TU813564 other upstream 216638 48288942 ~ 48289581 (-) True G715865
TU813956 other upstream 469987 48542291 ~ 48616523 (-) True dlg1l
TU814203 other upstream 687608 48759912 ~ 48761163 (-) True G716463
TU814220 other upstream 709817 48782121 ~ 48782515 (-) True G716480
TU814229 other upstream 716217 48788521 ~ 48788962 (-) True G716488

Expression Profile