RNA id: TU813283



Basic Information


Item Value
RNA id TU813283
length 1070
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G715608
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 48100413 ~ 48101638 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cgcagattcagctgtttatatatcaatcattatggtgactaagtcagggaaagctaaatctaagtctagatatacagatgtacacacaattttagaataaattgattgggaaagtgagacagagattgttgtaggacgattcatttagcgattgtggaggaatattttttgaacgggagaggacatcgttttggactgcctatttgaggctgttgaggggagggcaggcccacaacaatggccaaagtgaaatggagacagtagatacagctggtctgttgtaatatactaaaacattagatctagctggtctgtcataatataatagagacagtagatctagctgaaacgtcataatataatagagacagtagatctagcaggtcataataatatattcaaccttatgttccctgcaCTCTCTATATATagctgtttattatacctgttgatacagggctcatatgtgaaactattctaactgaacattttctttcacagtgacactgactccgaatgggagtcttatccggtgtcctgtgtgaatttaagtatgctctctctaattctctctttctctctctcggaggacctgagccctaggaccatgcgtcaggactacctggcatgatgactccttgctgtccccagtccacctggccttgccgctgttccagtttcaactgttctgcctgcggctatggaaccctaaactgttaatttttactcttgaggtgctgtcctgttgcacactctacaaccactgtgatctccacccggcacagccagaagaggactggccacccctcatagcctggttctctataggtttcttcctaggtttttgcctttctagggagtttttcctagccaccgtgcttctacatctgcattgcttgctgtttggggttttaggctggggctatatacagtggggcaaaaaagtatttagtcagccaccaattgtgcaagttctcccacttaaaaagatgagaggcctgtaattttcatcataggtacacttcaactatgacagacaaaatgagagaaaaaaatccagaaaattacat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU813281 lncRNA upstream 243 48099883 ~ 48100170 (+) True G715606
TU813279 lncRNA upstream 2161 48097678 ~ 48098252 (+) True G715604
TU813257 lncRNA upstream 25332 48074734 ~ 48075081 (+) True G715582
TU813254 lncRNA upstream 26514 48073547 ~ 48073899 (+) True G715579
TU813244 lncRNA upstream 36510 48063671 ~ 48063903 (+) True G715569
TU813356 lncRNA downstream 64102 48165740 ~ 48168950 (+) True G715679
TU813368 lncRNA downstream 75359 48176997 ~ 48177229 (+) True G715690
TU813369 lncRNA downstream 77029 48178667 ~ 48178881 (+) True G715691
TU813370 lncRNA downstream 78678 48180316 ~ 48180581 (+) True G715692
TU813423 lncRNA downstream 97804 48199442 ~ 48199675 (+) True G715745
XM_021612702.2 mRNA upstream 594179 47468480 ~ 47506234 (+) True LOC110529986
XM_021612701.2 mRNA upstream 647877 47440133 ~ 47452536 (+) False si:dkey-154p10.3
XM_021612704.2 mRNA downstream 44152 48145790 ~ 48162546 (+) False si:dkey-181m9.8
XM_021612706.2 mRNA downstream 44152 48145790 ~ 48162546 (+) True si:dkey-181m9.8
XM_021612735.2 mRNA downstream 577175 48678813 ~ 48803417 (+) False tnk2b
XM_021612733.2 mRNA downstream 594306 48695944 ~ 48803417 (+) False tnk2b
XM_021612732.2 mRNA downstream 630800 48732438 ~ 48803417 (+) False tnk2b
TU811150 other upstream 1331167 46715915 ~ 46769246 (+) True G713574
TU810963 other upstream 1634186 46465398 ~ 46466227 (+) True G713405
TU809392 other upstream 2305864 45793269 ~ 45794549 (+) True G711912
TU809309 other upstream 2453036 45646857 ~ 45647377 (+) True G711845
TU808451 other upstream 3651440 44448584 ~ 44448973 (+) True G711021
TU813740 other downstream 436105 48537743 ~ 48544164 (+) True G716035
TU813841 other downstream 658705 48760343 ~ 48760740 (+) True G716133
TU814604 other downstream 1231203 49332841 ~ 49333772 (+) True G716862
TU814748 other downstream 1444574 49546212 ~ 49547085 (+) True G716993
TU815524 other downstream 1751749 49853387 ~ 49854192 (+) True LOC118965615

Expression Profile