RNA id: TU813301


Basic Information

Item Value
RNA id TU813301
length 837
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G715625
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 48119315 ~ 48120151 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttctaaacaacgtttgccatgttttcagtcgatattatggagttaatttggaaaaaagttcgcgttttgaggactgaattttcgtttttttttggtagccaaatgtgatgtacaaaacggagctatttctaatacacaaagaatctttttggaaaaactgagcatctgctatctaacagagtctcctcattgaaaacatctgaagttcttcaaaggtaaatgattttatttgaaggcttttatgtttttgttgaaatgttgggtgttgaatgctaatgctaacgctaaatgctaacgctaaatgctaacgctaaatgctacgctagctagctacttttacacaaatgattgttttcctatggttgagaagcatattttgaaaatctgagatgacagtgtttacaaaaggctaagcttgagagatggcatatttatttcatttcatttgcgattttcataaattgTTAACGTTGTgttaatgagcttgctgatagatttacacaatcctggatacaggggttttttcatagctaaacgtgacgcagaaaacggagcgatttgtcctaaacaaataatctttcaggaaaaactgaacatttgctatctgagagtctcctcattgaaaacatctgaagttcttcaaaggtaaatgattttatttgaatgcttttctgtttttttgtgtaaatgttgtcagctgaatgctaatgctaaatgctacgctaaatgctacgttagccatcaatactgttacacaaatgcttgttttgcaatggttgagaagcatattttgaaaatctgagatgacagtgttgttaacgaAAGGCTAAGCTTGAa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU813321 lncRNA downstream 6023 48111714 ~ 48113292 (-) True G715645
TU813260 lncRNA downstream 43144 48075870 ~ 48076171 (-) True G715585
TU813256 lncRNA downstream 44785 48074163 ~ 48074530 (-) True G715581
TU813253 lncRNA downstream 47011 48071971 ~ 48072304 (-) True G715578
TU813247 lncRNA downstream 53284 48065799 ~ 48066031 (-) True G715572
TU813395 lncRNA upstream 43579 48163730 ~ 48164225 (-) True G715717
TU813393 lncRNA upstream 47623 48167774 ~ 48168935 (-) True G715715
TU813399 lncRNA upstream 53862 48174013 ~ 48174231 (-) True G715721
TU813403 lncRNA upstream 60544 48180695 ~ 48181019 (-) True G715725
TU813404 lncRNA upstream 61575 48181726 ~ 48182007 (-) True G715726
XM_021612703.2 mRNA downstream 225139 47726790 ~ 47894176 (-) False LOC110529987
XR_002474329.2 mRNA downstream 463247 47655052 ~ 47656068 (-) True LOC110529117
XR_005052885.1 mRNA downstream 679373 47397783 ~ 47439942 (-) False LOC110529981
XM_021612708.2 mRNA upstream 209533 48329684 ~ 48343010 (-) True LOC110529989
XM_036985531.1 mRNA upstream 235853 48356004 ~ 48429216 (-) False dlg1l
XM_036985532.1 mRNA upstream 235853 48356004 ~ 48429216 (-) False dlg1l
XM_021612717.2 mRNA upstream 235853 48356004 ~ 48486048 (-) False dlg1l
XM_021612729.2 mRNA upstream 235853 48356004 ~ 48515295 (-) False dlg1l
TU812043 other downstream 940579 47178424 ~ 47178736 (-) True G714425
TU811888 other downstream 1061655 47051467 ~ 47057660 (-) True LOC110529973
TU811283 other downstream 1793634 46311130 ~ 46325681 (-) True crfb16
TU810338 other downstream 2661067 45457777 ~ 45458248 (-) True G712814
TU808567 other downstream 3579811 44538793 ~ 44539504 (-) True G711133
TU813564 other upstream 168791 48288942 ~ 48289581 (-) True G715865
TU813956 other upstream 422140 48542291 ~ 48616523 (-) True dlg1l
TU814203 other upstream 639761 48759912 ~ 48761163 (-) True G716463
TU814220 other upstream 661970 48782121 ~ 48782515 (-) True G716480
TU814229 other upstream 668370 48788521 ~ 48788962 (-) True G716488

Expression Profile