RNA id: TCONS_00035706


Basic Information

Item Value
RNA id TCONS_00035706
length 2881
RNA type mRNA
GC content 0.43
exon number 14
gene id XLOC_018114
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 26827265 ~ 26866111 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGGAGAAACAAGAGACCGACTTGAGAGAATGAGAAGGGACAGTAGATTGTGAAACGAACGTGAAGTCTAGTTAATCTTAACATTTTGTAACGTCTTTTAAAGAGTTTTATCATGAGCTCTAATCTTGTGAAGTCTCTTGCTCGGGTTTATGACCCCAAACCACTTCATGCTCAAAAACGGCATAACAGTGGAAGAGCCGGAGCAAGAAGAGCTTCGCTTTCAACCTCAAACAAATGCTCATCTTCACCAGTTTTGGATCAGCCTACTTCAAAATCTTCTCTAGTACATATTGAAGGACAAGTCAATGATCTGAGCGGTAAGATGGACAAACTCCTCGCCCTGCAGGAGGCATCTCTGAAACGGCTAGATGCCATTGGGCAGGAACATAGCACAGGTGGACGCAGTGTTGAGCAGATGTTGTGTGATGTGCGTGTCGTCATTGAAACTGTTAGAGAAAAGGAGGAACAGCAGGATCAGCGGCTTGATGCTTTGGAGCGACTGGTCAGCAGCATTCAGCAGGTTGTCAGTTTTGTTGCTGAGGCGTTGAAACAAGAGAGTTTGGCCGATCACTTGaaaaacacaaactcaaaatccAGCAGCAGGTTTAGAGAAAAGGATGGGAAGGAGAAATCTAAAGGGTACCCAAAAGGGTTGAAAACCCAGAAGAAAAAGAAGCCACTAGATGCATCAGATTCAGTCCAGGCTGGTTTTGAAGAAGTGCAAAAGCTCAACCAACAGAACAATCAGCTTTCTCAATGCACAGCAGAGACAGCAGCCGGCACATCCACGCAACTAGAGATTATTAAAGAGGCACAAACAACAGAGATATTCAGGGAAATAAAAGATGATGCACAGCAGGCAGTGGTGGAAGAAGAGACAAGAGAGAAAGAAAGCATTGCAGAATTACTGCAGGTAACAGGAGAGGATAAAAAGGAGGAAGAAGAAAGAGTACAGAAAGAAGAGGATATAAGGTTAACAGAGGAAAGCCAACTAGCTGCTCCAACTTCATCTGGACAGAATGATAAAATCATCACAGCCACACCAGAAAGCTGTGAGGAGAATCTGGAAATAATTTTGAGCACTAAGAGGCATGTAAGTGACGAGTCTCTGACAGATGATCTTAAAAAAAGCAGAgtggaagaggaagaggaggaggagaaagaattgaaggaggaggaagaagaggcggGGCTTGAAGCTGCAGAGGCAGGACCAGAGGAGGAGACGGAAGAGGAGAGGAAAGATGCTGAAGCAGTGACTGATGAATATGTCATTGATTCTTCCCCTCCTCCACCTGCACCATTTGAGCATCGTCTTGTGTCAACCAAAACCCACCAGATTACCAGCTACTACAACATCAATAAGGAGGAAGTTCTTGGAGGaggACGGTTTGGCATAGTGCACAAATGTGAAGAGAAGTCCTCCGGCCTCATATTAGCAGCCAAGATCATCAAAGCCAGGAGTCAGAAAGAGAAGgAGGTTGTAAAGTGTGAGATTGAAGTGATGAACCAGTTAAATCATGCCAATTTAATCCAGCTCTATGCCGCCTTTGAATCGCGGCATGAAATCACTCTAGTGATGGAGTATGTTGACGGTGGAGAGCTATTTGAACGGATCATAGATGAAAACTACAAGCTCACTGAGTTGGACACAGTGCTGTTCATCAGACAAATCACTGAAGGCCTTCAGTACATGCACAAGATGTACATTTTACACCTTGACCTAAAGCCTGAAAACATTCTCTGTATCAGTCGAGAAACAAACAAGGTCAAGATAATCGACTTTGGACTTGCAAGAAGATATAAACCCAGGGAAAAGTTGAGGGTGAACTTTGGCACGCCTGAGTTCTTGGCTCCTGAAGTCATCAACTATGAATTTGTCTCATTCCCGACTGATATGTGGAGTTTAGGTGTCATCACGTACATGCTGCTTAGCGGTTTGTCTCCGTTCCTGGGTGAGGATGACAATGAGACGCTAAACAACATCCTGGCATGTCAGTGGAGTTTTGAAGAAGCAGAGTTTGCTGACATCTCTGAGGAGGCCAAAGACTTTATATCGCGCCTGCTTGTGAAGAGCAAAAGTTGGAGAATGAGTGCGTCTCAGTCCCTGAAACACCCATGGCTTTCAGACCGAGGGCTTCACTACCGTCTGCATCATAAGAAAAACAAGTGTCACTCTTCACATGCACCTCCACCAGAGGGTTAAAAAGaattGATCATTGGCTGATCATCCTGATCCTGTGGTGACAAACTGGACCAATACTGTTGTAATTGAACAACTACACAACATCTGTTTAATACTACAGTcgcatactgtactgtactgaactGTACCGTACAATATCTATTACCTATTTACCTCAACCTTTAACGAAAACATATATACAACACATCAAAAATACTGCTCATCACTTGTGATACAAACACAAATCACCTTTTTGTAAAATAGTAGCCATTTAGGACTCTATGATGAACCTGTGCTTCAGTCCTGGTTTAGGTTGGTTTTAACAGTCTGTTAGTTGTTGtcttatgaagaaaaaaaagatatacaGTTAATTGGTCCTGGTTTTATCTTGAATGTGCACTTTACAATAGGACTGGATTGGATAAAGAATGTTAAGCCCAAAGTATACTTTTTATGTGTACAATTCTAAAGGCACAGGTATACTTCATTTTCCACATTCTGCTCTGTCTCAAGGACGGTTGTGTCCACTCAGCTTTCAAATGATAATCAGCTCGGAATTAAGATGAAGACCTTTAGCAAATATATTGTAATGTGGAcagtgcacaaaatagaacagaaTCTTGGAAGGctgaagtacagttgaagtcagaattgttagttcCCCTGTATTATtagagcccctgtttatttttttcc

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0004687 myosin light chain kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041001-128 Predicted to enable myosin light chain kinase activity. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human MYLK4 (myosin light chain kinase family member 4).

Ensembl:

ensembl_id ENSDART00000136687

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036847 lncRNA downstream 118739 26631070 ~ 26708526 (-) True XLOC_018112
TCONS_00036846 lncRNA downstream 118783 26631070 ~ 26708482 (-) False XLOC_018112
TCONS_00036845 lncRNA downstream 276032 26548237 ~ 26551233 (-) False XLOC_018110
TCONS_00035697 lncRNA downstream 276462 26548237 ~ 26550803 (-) False XLOC_018110
TCONS_00035696 lncRNA downstream 276505 26544250 ~ 26550760 (-) False XLOC_018110
TCONS_00036848 lncRNA upstream 86040 26932068 ~ 26935771 (-) False XLOC_018115
TCONS_00035712 lncRNA upstream 88974 26935002 ~ 26935771 (-) True XLOC_018115
TCONS_00035713 lncRNA upstream 113505 26959533 ~ 26962756 (-) True XLOC_018116
TCONS_00035725 lncRNA upstream 457820 27303848 ~ 27304286 (-) False XLOC_018122
TCONS_00036849 lncRNA upstream 1268736 28114764 ~ 28154496 (-) False XLOC_018129
TCONS_00035702 mRNA downstream 4715 26709009 ~ 26822550 (-) False XLOC_018113
TCONS_00035703 mRNA downstream 4715 26709011 ~ 26822550 (-) False XLOC_018113
TCONS_00035705 mRNA downstream 4715 26807309 ~ 26822550 (-) True XLOC_018113
TCONS_00035704 mRNA downstream 4743 26775812 ~ 26822522 (-) False XLOC_018113
TCONS_00035699 mRNA downstream 203223 26572456 ~ 26624042 (-) False XLOC_018111
TCONS_00035709 mRNA upstream 74653 26920681 ~ 26929685 (-) False XLOC_018115
TCONS_00035710 mRNA upstream 82887 26928915 ~ 26936887 (-) False XLOC_018115
TCONS_00035711 mRNA upstream 85468 26931496 ~ 26937453 (-) False XLOC_018115
TCONS_00035714 mRNA upstream 203495 27049523 ~ 27086143 (-) True XLOC_018117
TCONS_00035716 mRNA upstream 244880 27090908 ~ 27092290 (-) True XLOC_018119
TCONS_00035701 other downstream 238355 26584112 ~ 26588910 (-) True XLOC_018111
TCONS_00035698 other downstream 276032 26550661 ~ 26551233 (-) True XLOC_018110
TCONS_00035691 other downstream 315992 26502486 ~ 26511273 (-) False XLOC_018108
TCONS_00035690 other downstream 338320 26480428 ~ 26488945 (-) False XLOC_018108
TCONS_00035681 other downstream 435308 26390795 ~ 26391957 (-) True XLOC_018105
TCONS_00035715 other upstream 208067 27054095 ~ 27054220 (-) True XLOC_018118
TCONS_00035722 other upstream 378784 27224812 ~ 27225878 (-) True XLOC_018121
TCONS_00035726 other upstream 462388 27308416 ~ 27311615 (-) True XLOC_018122
TCONS_00035747 other upstream 1765244 28611272 ~ 28612322 (-) True XLOC_018136
TCONS_00035753 other upstream 1986734 28832762 ~ 28842571 (-) False XLOC_018139

Expression Profile

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