RNA id: TU813481


Basic Information

Item Value
RNA id TU813481
length 3416
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G715789
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 48221706 ~ 48230202 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAAAGTTCCCTAGTCCTTGAGgatgacaagcatatccataacatgatgcagccaccaccatgctttaaaaTATTAAGAATGGTACTCGGTGATGTGTTGaacttgccccaaacataacactttgtattcaggacttaAAGATAATGTATttctttttgcagttttactttaatgCCTTATTGCAATCATGATGcatgttttagattttttttgtacaGAATTCCTTTTTTTCACTGTatgttgaacaaaaatataaacgcaacatgcaacaatttcaattatttttctgagttacagttcatacaagaaaatcagtcaattgagatAAGTGTTAGGCCATAATTTCTGGACTTCACATGacttggaatacagatatgcatctatttGTCACAGAtacaaaaaaaggtaggggcgtggatcagaaaaccagtcagtatctggtgtgacgaccacttgcctcatgcagcacaacacattcccttcgcatagagttgatctggCTATTGATTATGGCTTGTGGACTGTTGTCTCACACCTCTTCGATGGtagtgcaaagttgctggatgttggcgggaactgaaacatgctgtcgtacacgtcgatccagagcatcccaaacttggTCAATGGCTAGTCTCAGACAGTCTCGCAGgtaaagaagctggatgtggaggtcctgggttggcatgtgtagtggaaatttcctgtattaccaaatcatgagagagcaaaACCCACACataagtcagagttatcataaagtctatctttaattatatgagctcatCACAagcctgtgactctcagatcaattcagtgtctataaatgaattctctgagagtgcttacacattgcaactgagatcctttatagcaaagacacacatagccagacagcattggctataaattattgttcagctttggtctcctaaactatgttcttatcTCGCTCTTGGTACCACTCAGGACCAAAAACAAAACCTCATCCACtagcatatatcaaatacacccctcctggacaagatcacagagacagtgAGCCTCCTAGGCCATATACTAaatcaagataagggcaacctcagaAGGGACATGTAAATAGTTAGACACATTCCCATAAGAAGACAAGCCTAACCTCTCCCcaatgggaaaagtagggagtgactggcatacagacattgtggagccaagagataattgatTCCCCCTCAATCATcacttcacatggtttaaaagataCGTTTACATATGAAAattaataaaacatcttatttataaaTGTTGCCGAAAGGTTTCTGATTCTGCCACGACATTCCCCTCTCAGGGACATTGTCCCTTCTAAAGAATCAGAACATTAATTACATACTCGAtattaaaaaattaaaattaaaaaatcccctcaatgtcaaataccttagcttatatgtaagctttctcccttctgaaactacgtttacaacctttattctacaagacaaacttgcacatgtttaataacacagaataatccgtttgaggaaaataaaaacataacataGAAATGCTCCCTAAGATATATGAGAACCAGTATCTAAACATAGGCCTCATCACAACATATAGGACAGTCATCCCTCTAAGTCCTTATGCTCAGAGATGTAATAAGGAATAGAGAATAGGTCAGGGAAATAATTCACATTCCAAATCATAATTAACAACCCAACTATTTATCCAACCCAAATTTATAATGACATTCCTAAGTGATTCAAATTGGTCTTATCACTCAAAGTAAAAACctcaatttaacacacatcaATGTTTGCAGATTTACATTCATTCAGTATAATTAtcccataattctactattaacttttttaatcatgattataatacagatcagtatctcaatgcattcttaatctaaattactacaATTTACATGGTGTAGACCTCTTCAATCAACCTGATACCACAAAAGTATAAACAATTTTATTGGCACAGTTGAACAACCCCCCCCCTTAGGCACTGATTCTTCTGGCGTCTTTTTCGTTCTTCGTCAGATAGCTTTACAGTTCAAAGTGGACGGCCCATGAGAATGTCCCAATTTCATTGTCTCATATTTACCACTCATGTCTTGTCCATTCGTCAACCAATACACCAGCATCATAAGAAAATGTTAGAACAAATCTCTCTCCATGATCACTCCATGTGGACTCTCACAGTATGAGAGAaacatgaaagaaaagcagttgatAGCTTAGATCTGATACTGTACACCAATTTCTGTCTTGGGTCTTTTCTCTTAGTAGAAGTGGTTCGGAAGGCCTTCTTCAACGCCTTTGTCActcttcttcagccagttagagggggttttgaggAACACACACTATTCGGTCCAATTATCTCTTCCATGCATTAAGATACATTAAGATGTCACTTTTCATGATAACCTCGAAtgaacagatcagaacaacagtttagttcagttcattaactacatgataaattattacttttattattcttaatacacatatctaaacatatttcaaaaataatatcaacacattctattgaaactattctttcaaattggtttatactccccatctcactgtcaactccatCGTAGAGCCAAGGATCAAGAAGTTAGACCTATACCTCTCgggaatagaacaaaacaaacacaacaatacaatacactcaacaatacaacacacTCCTTCACATATCACTCAAGGTGTATAACTTCAATTCAAACCCTCCAAAAATTTTATCCTACCCCATGTTTTACACATATCTCTCCATATGAGAGTAATGTAAAacaaaactggaaaaaaaatataaaacaacatttcaactaacctaatcaaattaaaatcactaaACTGAAAAAAACTCCACAAAAAATTATTTAAGCCCTATGGTCataggaaaatagacttaaagcagcatacccttagttaaaagCAATGCCATCTCCTTCTTCACAGTGGTCCAAATTACAAATATGGATAAGAAACATATTTACCAATTACACAAATTATCTTGAAAGCAGTATTACAAATTACCATaaattcattatccaaatggctttccaatgcgGGTGATCAAGCCACAACGGAAGGTCATCAGATGGTCATAGGTCATACAAAACCCTTCAAATAAGTGTTTTTCACTATATTAGACAAATTGCAAACAATAGTCAAATAGTTCCTACATGTTGTAtcccaggttcccagaacattcctttatcaaaaTAATTAACGTGCgtaattaaaactcagaaaataaaaactcatTAAAATCCCATGTGAGTGAGTGCCCCTTTAAGATACCTTTGCACTTTATGGCAGTTTATGGCCTcaatctcactcactctccccaagAGTATAGTCCCTGGAAAAATTCCAAAGAGAGACAATGAAATACCCATTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU813461 lncRNA downstream 1864 48219633 ~ 48219842 (-) True G715783
TU813459 lncRNA downstream 2526 48218926 ~ 48219180 (-) True G715781
TU813436 lncRNA downstream 15250 48206238 ~ 48206456 (-) True G715758
TU813412 lncRNA downstream 32994 48188488 ~ 48188712 (-) True G715734
TU813405 lncRNA downstream 39479 48182014 ~ 48182227 (-) True G715727
TU813516 lncRNA upstream 27520 48257722 ~ 48258017 (-) True G715824
TU813552 lncRNA upstream 55689 48285891 ~ 48286307 (-) True G715860
TU813561 lncRNA upstream 56830 48287032 ~ 48287824 (-) True G715862
TU813991 lncRNA upstream 68363 48298565 ~ 48298788 (-) True G716253
TU813999 lncRNA upstream 77984 48308186 ~ 48308467 (-) True G716261
XM_021612703.2 mRNA downstream 327530 47726790 ~ 47894176 (-) False LOC110529987
XR_002474329.2 mRNA downstream 565638 47655052 ~ 47656068 (-) True LOC110529117
XR_005052885.1 mRNA downstream 781764 47397783 ~ 47439942 (-) False LOC110529981
XM_021612708.2 mRNA upstream 99482 48329684 ~ 48343010 (-) True LOC110529989
XM_036985531.1 mRNA upstream 125802 48356004 ~ 48429216 (-) False dlg1l
XM_036985532.1 mRNA upstream 125802 48356004 ~ 48429216 (-) False dlg1l
XM_021612717.2 mRNA upstream 125802 48356004 ~ 48486048 (-) False dlg1l
XM_021612729.2 mRNA upstream 125802 48356004 ~ 48515295 (-) False dlg1l
TU812043 other downstream 1042970 47178424 ~ 47178736 (-) True G714425
TU811888 other downstream 1164046 47051467 ~ 47057660 (-) True LOC110529973
TU811283 other downstream 1896025 46311130 ~ 46325681 (-) True crfb16
TU810338 other downstream 2763458 45457777 ~ 45458248 (-) True G712814
TU808567 other downstream 3682202 44538793 ~ 44539504 (-) True G711133
TU813564 other upstream 58740 48288942 ~ 48289581 (-) True G715865
TU813956 other upstream 312089 48542291 ~ 48616523 (-) True dlg1l
TU814203 other upstream 529710 48759912 ~ 48761163 (-) True G716463
TU814220 other upstream 551919 48782121 ~ 48782515 (-) True G716480
TU814229 other upstream 558319 48788521 ~ 48788962 (-) True G716488