RNA id: TU813841



Basic Information


Item Value
RNA id TU813841
length 398
RNA type TUCP
GC content 0.51
exon number 1
gene id G716133
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 48760343 ~ 48760740 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tctccataagacgatgaaatggtacaagaccttctatcatttcattgacattgctgtggtgaatgcattcATTCTACACAAGGAAATGACTAAGAGCTGTGGaaagccccccatctcacagctagccttcagagagctgctcatcaaggagctacagcaccactgcaccacgttctggcccctctacctctgtcccttctgctcctgccacaagtggtgttcatctgcccaaatgtatttctgcaggcatggatgtgcctcagggccaaaagggcacagcatggaggtgtcgctgtgttctttgcaaaatgaagtcccccatcacctgcaccacatgcttggtgaccctctgctttacagcagaaagagactgctacggcacctggcatcagcagcac

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU813891 lncRNA upstream 662 48759465 ~ 48759681 (+) True G716177
TU813886 lncRNA upstream 6257 48753863 ~ 48754086 (+) True G716172
TU813885 lncRNA upstream 6534 48753520 ~ 48753809 (+) True G716171
TU813779 lncRNA upstream 181295 48577633 ~ 48579048 (+) True G716074
TU813603 lncRNA upstream 404895 48354982 ~ 48355448 (+) True G715904
TU813905 lncRNA downstream 18887 48779627 ~ 48779932 (+) True G716191
TU813838 lncRNA downstream 39829 48800569 ~ 48806257 (+) False tnk2b
TU813840 lncRNA downstream 40678 48801418 ~ 48806257 (+) False tnk2b
TU813839 lncRNA downstream 41761 48802501 ~ 48806257 (+) True tnk2b
TU813913 lncRNA downstream 49375 48810115 ~ 48810348 (+) True G716199
XM_021612704.2 mRNA upstream 597797 48145790 ~ 48162546 (+) False si:dkey-181m9.8
XM_021612706.2 mRNA upstream 597797 48145790 ~ 48162546 (+) True si:dkey-181m9.8
XM_021612702.2 mRNA upstream 1254109 47468480 ~ 47506234 (+) True LOC110529986
XM_021612700.2 mRNA upstream 1307807 47440135 ~ 47452536 (+) False si:dkey-154p10.3
LOC110530923 mRNA downstream 142197 48902937 ~ 48931678 (+) True LOC110530923
XM_021611257.2 mRNA downstream 356987 49117727 ~ 49120309 (+) False adipoqb
NM_001246352.1 mRNA downstream 358167 49118907 ~ 49119971 (+) True adipoqb
XM_021612742.2 mRNA downstream 387227 49147967 ~ 49198179 (+) True LOC110529995
XM_036985536.1 mRNA downstream 446259 49206999 ~ 49209154 (+) True LOC110530924
TU813740 other upstream 216179 48537743 ~ 48544164 (+) True G716035
TU811150 other upstream 1991097 46715915 ~ 46769246 (+) True G713574
TU810963 other upstream 2294116 46465398 ~ 46466227 (+) True G713405
TU809392 other upstream 2965794 45793269 ~ 45794549 (+) True G711912
TU809309 other upstream 3112966 45646857 ~ 45647377 (+) True G711845
TU814604 other downstream 572101 49332841 ~ 49333772 (+) True G716862
TU814748 other downstream 785472 49546212 ~ 49547085 (+) True G716993
TU815524 other downstream 1092647 49853387 ~ 49854192 (+) True LOC118965615
TU815871 other downstream 1624806 50385546 ~ 50393836 (+) True LOC110530019
TU815927 other downstream 1875956 50636696 ~ 50641166 (+) True LOC110530024

Expression Profile


TU813841 Expression in all Baseline Samples

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TU813841 Expression in each Bioproject

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TU813841 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
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