RNA id: TU814220



Basic Information


Item Value
RNA id TU814220
length 395
RNA type TUCP
GC content 0.61
exon number 1
gene id G716480
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 48782121 ~ 48782515 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGGGACCCTGTTTTCTAAACAGAGGCCTATAGGAGTACGATGCAGACAAATACCTCTCCCACTACCAGCCtttccaacacacatacacacacacaaacagtacagtACCCACACACTACACTCCCACACCCCAGTCCCTCTCACCACTTTCCCGGCGGGCGTGAACCACTCGCCCCTCTTGACCACCCCGAAGGAGCCGTCGCCGAGCTTCTCGAAGAGAGCAAGGTCCTTCTCGCTGATCAGACAGGTGAGGGCCTGGTGCTGggggggctgggacagggacTGAGGACCCCCCTCAACCGCTGGGGGTGGCGTGGGGGACAGCTTGCGGAAGGAGGTGGTGGGCGCCGCCTGCTGGAAGTCCCCGCCATCCGGACGCTTCACACTGAACAcct

Function


GO: NA

KEGG: NA

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU814210 lncRNA downstream 11292 48770614 ~ 48770829 (-) True G716470
TU814206 lncRNA downstream 18508 48763327 ~ 48763613 (-) True G716466
TU814149 lncRNA downstream 105568 48676142 ~ 48676553 (-) True G716409
TU814148 lncRNA downstream 107391 48674401 ~ 48674730 (-) True G716408
TU814141 lncRNA downstream 122552 48659347 ~ 48659569 (-) True G716401
TU814223 lncRNA upstream 1900 48784415 ~ 48784823 (-) True G716483
TU814224 lncRNA upstream 2406 48784921 ~ 48785219 (-) True G716484
TU814237 lncRNA upstream 21037 48803552 ~ 48806253 (-) True G716496
TU814250 lncRNA upstream 45461 48827976 ~ 48828526 (-) True G716509
TU814253 lncRNA upstream 50688 48833203 ~ 48833545 (-) True G716512
XM_021612710.2 mRNA downstream 165533 48356004 ~ 48616588 (-) False dlg1l
XM_021612715.2 mRNA downstream 165578 48356004 ~ 48616543 (-) False dlg1l
XM_021612739.2 mRNA upstream 339534 49122049 ~ 49140272 (-) False LOC110529994
XM_021612740.2 mRNA upstream 339534 49122049 ~ 49140273 (-) False LOC110529994
XM_021612741.2 mRNA upstream 339534 49122049 ~ 49140712 (-) True LOC110529994
XR_005053034.1 mRNA upstream 614284 49396799 ~ 49396853 (-) True LOC118965653
XM_036985545.1 mRNA upstream 660193 49442708 ~ 49490744 (-) False LOC110529999
TU814203 other downstream 20958 48759912 ~ 48761163 (-) True G716463
TU813956 other downstream 165598 48542291 ~ 48616523 (-) True dlg1l
TU813564 other downstream 492540 48288942 ~ 48289581 (-) True G715865
TU812043 other downstream 1603385 47178424 ~ 47178736 (-) True G714425
TU811888 other downstream 1724461 47051467 ~ 47057660 (-) True LOC110529973
TU814229 other upstream 6006 48788521 ~ 48788962 (-) True G716488
TU816366 other upstream 1003159 49785674 ~ 49837696 (-) True G718489
TU816422 other upstream 1084115 49866630 ~ 49889252 (-) False LOC110530011
TU817090 other upstream 2154413 50936928 ~ 50939471 (-) True G719151
TU817704 other upstream 2469840 51252355 ~ 51259019 (-) True LOC110530043

Expression Profile


TU814220 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.4.
End of interactive chart.

TU814220 Expression in each Bioproject

Bar chart with 3 bars.
TU814220 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1.75.
End of interactive chart.