RNA id: TU814224



Basic Information


Item Value
RNA id TU814224
length 299
lncRNA type antisense_over
GC content 0.51
exon number 1
gene id G716484
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 48784921 ~ 48785219 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CATTGAGGCCCAGCCAGGGCTCCTGTCCGTGGGTATACATCTCCCACAGCGTCACCCCGAACATCCAGGTGTCTGTGGCGTGGGAGAATGTCCGCGTCTTCAGGCTCTCCGGGGCACACCTGGAGGTGGAGGACAcgcacagcaaacacacacagcaaacacacCTTAAGAAGGTGATGAGAAGgtggaaaaaacacacacaaaacacaacacacactatgCATAGCCACATCAGGGGCTTATTCCCCAGGGCACAATGTTGTAGAATGTTCATATAAAAAATACTTTACTTAGAACAA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU814223 lncRNA downstream 98 48784415 ~ 48784823 (-) True G716483
TU814210 lncRNA downstream 14092 48770614 ~ 48770829 (-) True G716470
TU814206 lncRNA downstream 21308 48763327 ~ 48763613 (-) True G716466
TU814149 lncRNA downstream 108368 48676142 ~ 48676553 (-) True G716409
TU814148 lncRNA downstream 110191 48674401 ~ 48674730 (-) True G716408
TU814237 lncRNA upstream 18333 48803552 ~ 48806253 (-) True G716496
TU814250 lncRNA upstream 42757 48827976 ~ 48828526 (-) True G716509
TU814253 lncRNA upstream 47984 48833203 ~ 48833545 (-) True G716512
TU814254 lncRNA upstream 48476 48833695 ~ 48833915 (-) True G716513
TU814270 lncRNA upstream 71680 48856899 ~ 48857104 (-) True G716529
XM_021612710.2 mRNA downstream 168333 48356004 ~ 48616588 (-) False dlg1l
XM_021612715.2 mRNA downstream 168378 48356004 ~ 48616543 (-) False dlg1l
XM_021612739.2 mRNA upstream 336830 49122049 ~ 49140272 (-) False LOC110529994
XM_021612740.2 mRNA upstream 336830 49122049 ~ 49140273 (-) False LOC110529994
XM_021612741.2 mRNA upstream 336830 49122049 ~ 49140712 (-) True LOC110529994
XR_005053034.1 mRNA upstream 611580 49396799 ~ 49396853 (-) True LOC118965653
XM_036985545.1 mRNA upstream 657489 49442708 ~ 49490744 (-) False LOC110529999
TU814220 other downstream 2406 48782121 ~ 48782515 (-) True G716480
TU814203 other downstream 23758 48759912 ~ 48761163 (-) True G716463
TU813956 other downstream 168398 48542291 ~ 48616523 (-) True dlg1l
TU813564 other downstream 495340 48288942 ~ 48289581 (-) True G715865
TU812043 other downstream 1606185 47178424 ~ 47178736 (-) True G714425
TU814229 other upstream 3302 48788521 ~ 48788962 (-) True G716488
TU816366 other upstream 1000455 49785674 ~ 49837696 (-) True G718489
TU816422 other upstream 1081411 49866630 ~ 49889252 (-) False LOC110530011
TU817090 other upstream 2151709 50936928 ~ 50939471 (-) True G719151
TU817704 other upstream 2467136 51252355 ~ 51259019 (-) True LOC110530043

Expression Profile


TU814224 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.
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TU814224 Expression in each Bioproject

Bar chart with 10 bars.
TU814224 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 4.
End of interactive chart.