RNA id: TU814237


Basic Information

Item Value
RNA id TU814237
length 2682
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G716496
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 48803552 ~ 48806253 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCAGCATTAACTTGCATTTGCCCTCTTGCACAATTCCGAACACCCAGGGGGGAAATCTACTGTACAGCCATGTGAAAATACATTGGTACAGGTAAGTCGGATTGAACTAACAAACCAACAAAAAGGTAATACAaccataaaacatttaaaaaacatgaacAGGAGAACATTAATTTGGGTAATAATACCACAAGGTCGCTTCAGTCCTTCTACAACTACAGCAGCTTGGTATCAAATATATCAACGGTGTAAGACATGGGGACATGGAACTACAACATGGATTTTGATGTATATCAAGGAGTTCACAGCAATGGAAGCATTCTCTTTTTGTCACGGCTGGATGGCCTTGACTGTTTGGAAGAGGATCATTATTATTGCGTTCAGAAAGTTCTACAATGGCTGTGTTCCAAACCAAGAACATGTACCCTTTACTGCAGCCCTTTGAGGATTGGCTTGTATAAATCTTTACGGGAGGATAGGTAAGACAGATCGCCTCACTCTATTAataacctcttggtgttagggggcagtattttcatttttggaaaaaatacgttcccgttttaaacgggatattttgtcaggaaaagatgctagaatatgcatataattgacagctttggatagaaaacactctaacgtttccaaaactgtaaagatattgtctgtgagtataacagaactgatgttgcaggtgaaagcctgagaaaaatccagtccggaagtgccccaggttttgaaagcgctgcgttccaatgactccctatatggctgtgaatgtaccatcaacgagtttacgctttctacgtattccccaaggtgtctacagcattgtgacgtagttttacgcatttctgttgaagaatagccgtatgggggcacattgcgtaagtggtcacatggtggctccaaGAGAGATTCTCGGGTAAAgtgcagaggtagccattactccaatcggttctagagaaaaaggaattgtcccgacggatatattatcgaatagatattagaaaaacaccttgaggatggattctaaacagagtttgccatgtttctgtcgatattatggagctaatttgaaatatttttcggcgttgtggtgaccgcaatttccgggcgatttctcagccaaacgtggaGAACAAACGGAGTGATTTCGcctaaaaaataatattttgggaaaaaatgaactttggctgtctacctgggagtctcgtgagtgaaaacatccgaagttcatcaaaggtaaacgatttaatttgattgcttttctgatttccgtgacaagtttgcctgctgctagcaaggcataatgccatgctaggctatgataaacttacacaaatgcttgtctagcgttggctgtaaagcatattttgaaaatctaagatgacagggtgattaacaaaaggctaagctgtgttccaatatatttcacttgtgattttcatgaataggaatattttcaaggaagatttatgtccgttgcgttatgctaattagtgtcagatgatgataacggtcccgttcacgggttGGGCGTCACTACAGGTTAAATCCTGCAATAGGCTATGGGGCGTACTGTCAAATTGATTTAACACATCCAGACCTTATCTGCGAGGGCAAACGACTGAAAGAACAGGGCAAAAAGACAAAGTTTGAGTTTGTAACACGAGCAAAGTGTTTATGAGACAGTACACTGTGTTCACAAACAGACACTGGAGAATGTCTAGACAGTCTgtttcacacacagagacaggcacaAACCCAGTCAAACGTCCAAATTGGTAGTGACTACAGAAAGACTGGGGAAAGACCAGCCTGCAAGCCCGCTACACTGGTAGGTGTGGTCTACTTGGAGTCTGCCAGTTTAACCGTGTTGGTCTGTGCTGGAATTTTAACTGATTTGAGTTCAGTTTTCAGGCCTTCTCAGGTAAGACTTATTTACATATTGGAATCAACTATAAAAGATCTTAATGTTCAAAAACATAATTTGAATCATAACACACGGAAAACAGCAGGTTGCGTGCAACCATTGCAGAATAGCTGCTCCACTGGTCTATGATGAATATAGAGGATAGCACAGTATAGAAAATACATCGAAAACAGACACTCACATTTTACATTACAGTTTGTTCTAGGTTTTGAGAGGTCTGCATACTTTATTGGCCGAGTCTAATCCAGTATTGTGACATTTTGGATCTTGCATGTGCTTGATGTGAGTAACCAACTAGGGCCAGTACTGAAATTTCTTCCCCTCAAAATTCTCTGCAACCTATGGGTGCTGACTAAAGGTTTTAGCTCCTAATAGTTGAGGTAAAGACTAGTTACTAGGGGTATTGTCTCTGCTCGGGAAATCTTTGTCCTGGAGCACTGGCAACGTTCTTAATTAATTATTTAAGTATCAATGTGCTTTGAAAATAAGCAAGCCAGTGGGCCATTTTCAATAGTAGTTTTGTGTGGGAAAAGTACTTAGAGTAGATAGTGAGGGAGCACAAAAAAAGAGTCAGGTGTCAAATTGTTCTGTTCACCAGTAGGGAACGATTAAATGGACATTTGGGTGGATCAAATTAATAGTACTTAGAGCCACAAGTGAACTCAATTCAGGGTGAGCACATTCTAACAAACAGCTTAACtgatcaaaataaaataaaacatctcaaGAGAGTTGAACATTTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TU814224 lncRNA downstream 18333 48784921 ~ 48785219 (-) True G716484
TU814223 lncRNA downstream 18729 48784415 ~ 48784823 (-) True G716483
TU814210 lncRNA downstream 32723 48770614 ~ 48770829 (-) True G716470
TU814206 lncRNA downstream 39939 48763327 ~ 48763613 (-) True G716466
TU814149 lncRNA downstream 126999 48676142 ~ 48676553 (-) True G716409
TU814250 lncRNA upstream 21723 48827976 ~ 48828526 (-) True G716509
TU814253 lncRNA upstream 26950 48833203 ~ 48833545 (-) True G716512
TU814254 lncRNA upstream 27442 48833695 ~ 48833915 (-) True G716513
TU814270 lncRNA upstream 50646 48856899 ~ 48857104 (-) True G716529
TU814284 lncRNA upstream 58795 48865048 ~ 48865299 (-) True G716543
XM_021612710.2 mRNA downstream 186964 48356004 ~ 48616588 (-) False dlg1l
XM_021612715.2 mRNA downstream 187009 48356004 ~ 48616543 (-) False dlg1l
XM_021612739.2 mRNA upstream 315796 49122049 ~ 49140272 (-) False LOC110529994
XM_021612740.2 mRNA upstream 315796 49122049 ~ 49140273 (-) False LOC110529994
XM_021612741.2 mRNA upstream 315796 49122049 ~ 49140712 (-) True LOC110529994
XR_005053034.1 mRNA upstream 590546 49396799 ~ 49396853 (-) True LOC118965653
XM_036985545.1 mRNA upstream 636455 49442708 ~ 49490744 (-) False LOC110529999
TU814229 other downstream 14590 48788521 ~ 48788962 (-) True G716488
TU814220 other downstream 21037 48782121 ~ 48782515 (-) True G716480
TU814203 other downstream 42389 48759912 ~ 48761163 (-) True G716463
TU813956 other downstream 187029 48542291 ~ 48616523 (-) True dlg1l
TU813564 other downstream 513971 48288942 ~ 48289581 (-) True G715865
TU816366 other upstream 979421 49785674 ~ 49837696 (-) True G718489
TU816422 other upstream 1060377 49866630 ~ 49889252 (-) False LOC110530011
TU817090 other upstream 2130675 50936928 ~ 50939471 (-) True G719151
TU817704 other upstream 2446102 51252355 ~ 51259019 (-) True LOC110530043
TU819491 other upstream 3954786 52761039 ~ 52761451 (-) True G721275

Expression Profile

TU814237 Expression in all Baseline Samples

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TU814237 Expression in each Bioproject

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TU814237 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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