RNA id: TU814510



Basic Information


Item Value
RNA id TU814510
length 375
lncRNA type intronic
GC content 0.45
exon number 1
gene id G716768
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 49174900 ~ 49175274 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


attgtcatgctgaaagacccagccacgtttcatcttcaatgcccttgctgatggaaggaggttttcactcaaaatctcacgatatatggccccattcattctttcctttacacggatcagtcgtcctggtccctttgcagaaaaacagccccaacgcatgatgtttccacccccatgcttcacagtaggtatggtgttctttggatgcaactcagcattctttgtcctccaaacacaacgagttgagtttttaccaaaaagttatattttggtttcatctgaccatatgacattctcccaatcttcttctggatcatccaaatgctctctagcaaacttcagacgggcctggacatgtactggcttaagcagggg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU814508 lncRNA upstream 684 49173902 ~ 49174216 (+) True G716766
TU814505 lncRNA upstream 3625 49171008 ~ 49171275 (+) True G716763
TU814497 lncRNA upstream 17360 49157320 ~ 49157540 (+) True G716755
TU814494 lncRNA upstream 22297 49152404 ~ 49152603 (+) True G716752
TU814396 lncRNA upstream 93600 48999365 ~ 49081300 (+) True G716654
TU814512 lncRNA downstream 1432 49176706 ~ 49176995 (+) True G716770
TU814513 lncRNA downstream 3282 49178556 ~ 49179031 (+) True G716771
TU814489 lncRNA downstream 23000 49198274 ~ 49203279 (+) True G716747
TU814490 lncRNA downstream 67808 49243082 ~ 49244007 (+) True G716748
TU814552 lncRNA downstream 79966 49255240 ~ 49255456 (+) True G716810
XM_021611257.2 mRNA upstream 54591 49117727 ~ 49120309 (+) False adipoqb
NM_001246352.1 mRNA upstream 54929 49118907 ~ 49119971 (+) True adipoqb
LOC110530923 mRNA upstream 243222 48902937 ~ 48931678 (+) True LOC110530923
XM_021612733.2 mRNA upstream 371483 48695944 ~ 48803417 (+) False tnk2b
XM_036985536.1 mRNA downstream 31725 49206999 ~ 49209154 (+) True LOC110530924
XM_021612743.2 mRNA downstream 103575 49278849 ~ 49381386 (+) False gpr158b
XM_021612744.2 mRNA downstream 211891 49387165 ~ 49420283 (+) True LOC110529997
XM_036985539.1 mRNA downstream 331510 49506784 ~ 49556904 (+) False LOC110530001
XM_036985537.1 mRNA downstream 331510 49506784 ~ 49564784 (+) False LOC110530001
TU813841 other upstream 414160 48760343 ~ 48760740 (+) True G716133
TU813740 other upstream 630736 48537743 ~ 48544164 (+) True G716035
TU811150 other upstream 2405654 46715915 ~ 46769246 (+) True G713574
TU810963 other upstream 2708673 46465398 ~ 46466227 (+) True G713405
TU809392 other upstream 3380351 45793269 ~ 45794549 (+) True G711912
TU814604 other downstream 157567 49332841 ~ 49333772 (+) True G716862
TU814748 other downstream 370938 49546212 ~ 49547085 (+) True G716993
TU815524 other downstream 678113 49853387 ~ 49854192 (+) True LOC118965615
TU815871 other downstream 1210272 50385546 ~ 50393836 (+) True LOC110530019
TU815927 other downstream 1461422 50636696 ~ 50641166 (+) True LOC110530024

Expression Profile