RNA id: TU815132



Basic Information


Item Value
RNA id TU815132
length 337
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G717359
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 49243667 ~ 49244003 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AAACAAAGCACTTGCACTCCCTTACATTCATACCCAAAGTCAGAGCAAACATCTTGTGTCTTTTAACAGGAAGTGAACATCAAGATTATAGGCCTATGGCAGACGATTTGCCTCAGTAACTACTGTAGGGATAATAATATTTAACAatctacatttaatacattttactatctgactccatttaataTAGTAAAACCATGTGCAATAAGATTAAGAAATGGTAATGAGAAGAGAATCCAAGGTATTAGGTAGTTCTTCTCAATGAACAACTTTCAAATAGATAACAAACATGGATGCTATAGTATTATTCTCACACATTCCAATAGTCAGTCCGCTG

Function


GO: NA

KEGG: NA

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU815079 lncRNA downstream 64632 49178519 ~ 49179035 (-) True G717307
TU815070 lncRNA downstream 77439 49165939 ~ 49166228 (-) True G717298
TU815069 lncRNA downstream 77856 49165364 ~ 49165811 (-) True G717297
TU815063 lncRNA downstream 85949 49157228 ~ 49157718 (-) True G717291
TU815061 lncRNA downstream 87442 49155971 ~ 49156225 (-) True G717289
TU815147 lncRNA upstream 22147 49266150 ~ 49266351 (-) True G717374
TU815158 lncRNA upstream 35030 49279033 ~ 49280289 (-) True G717385
TU815163 lncRNA upstream 44786 49288789 ~ 49288992 (-) True G717390
TU815188 lncRNA upstream 75301 49319304 ~ 49319523 (-) True G717415
TU815191 lncRNA upstream 85709 49329712 ~ 49329973 (-) True G717418
XM_021612741.2 mRNA downstream 102955 49122049 ~ 49140712 (-) True LOC110529994
XM_021612740.2 mRNA downstream 103394 49122049 ~ 49140273 (-) False LOC110529994
XM_021612739.2 mRNA downstream 103395 49122049 ~ 49140272 (-) False LOC110529994
XM_021612710.2 mRNA downstream 627079 48356004 ~ 48616588 (-) False dlg1l
XR_005053034.1 mRNA upstream 152796 49396799 ~ 49396853 (-) True LOC118965653
XM_036985545.1 mRNA upstream 198705 49442708 ~ 49490744 (-) False LOC110529999
XM_036985544.1 mRNA upstream 198705 49442708 ~ 49490750 (-) False LOC110529999
XM_036985547.1 mRNA upstream 198705 49442708 ~ 49490750 (-) False LOC110529999
XM_036985546.1 mRNA upstream 198705 49442708 ~ 49490756 (-) False LOC110529999
TU814229 other downstream 454705 48788521 ~ 48788962 (-) True G716488
TU814220 other downstream 461152 48782121 ~ 48782515 (-) True G716480
TU814203 other downstream 482504 48759912 ~ 48761163 (-) True G716463
TU813956 other downstream 627144 48542291 ~ 48616523 (-) True dlg1l
TU813564 other downstream 954086 48288942 ~ 48289581 (-) True G715865
TU816366 other upstream 541671 49785674 ~ 49837696 (-) True G718489
TU816422 other upstream 622627 49866630 ~ 49889252 (-) False LOC110530011
TU817090 other upstream 1692925 50936928 ~ 50939471 (-) True G719151
TU817704 other upstream 2008352 51252355 ~ 51259019 (-) True LOC110530043
TU819491 other upstream 3517036 52761039 ~ 52761451 (-) True G721275

Expression Profile


TU815132 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 2.
End of interactive chart.

TU815132 Expression in each Bioproject

Bar chart with 7 bars.
TU815132 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 3.
End of interactive chart.