RNA id: TU814599


Basic Information

Item Value
RNA id TU814599
length 263
lncRNA type intronic
GC content 0.41
exon number 1
gene id G716857
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 49317216 ~ 49317478 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTACAAAACCTTCCCCTCCCAGTAGAATATGATTAGCGGTGAAGGGAGCTAGTTCTCTAGGCTCAAAGACAATTGATCTAAACAACTACAGTTTATGCTTCAAAGCAACAAGTAGGTCTGACTGCCCTTCCTTCAAGGCATACCCCGGTTTCTCTACATCACCACTGAAATACAATGTCTCAAACCCTACGTaatgccatcacacacacacagtataatcCACTATTCATGAGCATTCATATCATTGCAAATCTATTTCGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU814581 lncRNA upstream 19308 49297658 ~ 49297908 (+) True G716839
TU814561 lncRNA upstream 50775 49266234 ~ 49266441 (+) True G716819
TU814552 lncRNA upstream 61760 49255240 ~ 49255456 (+) True G716810
TU814490 lncRNA upstream 73209 49243082 ~ 49244007 (+) True G716748
TU814489 lncRNA upstream 113937 49198274 ~ 49203279 (+) True G716747
TU814603 lncRNA downstream 15025 49332503 ~ 49332728 (+) True G716861
TU814605 lncRNA downstream 24442 49341920 ~ 49342169 (+) True G716863
TU814615 lncRNA downstream 29911 49347389 ~ 49348115 (+) True G716868
TU814618 lncRNA downstream 33834 49351312 ~ 49351595 (+) True G716871
TU814620 lncRNA downstream 36484 49353962 ~ 49354187 (+) True G716873
XM_036985536.1 mRNA upstream 108062 49206999 ~ 49209154 (+) True LOC110530924
XM_021612742.2 mRNA upstream 119037 49147967 ~ 49198179 (+) True LOC110529995
XM_021611257.2 mRNA upstream 196907 49117727 ~ 49120309 (+) False adipoqb
NM_001246352.1 mRNA upstream 197245 49118907 ~ 49119971 (+) True adipoqb
LOC110530923 mRNA upstream 385538 48902937 ~ 48931678 (+) True LOC110530923
XM_021612744.2 mRNA downstream 69687 49387165 ~ 49420283 (+) True LOC110529997
XM_036985539.1 mRNA downstream 189306 49506784 ~ 49556904 (+) False LOC110530001
XM_036985537.1 mRNA downstream 189306 49506784 ~ 49564784 (+) False LOC110530001
XM_036985538.1 mRNA downstream 189306 49506784 ~ 49564784 (+) False LOC110530001
XM_021612746.2 mRNA downstream 191821 49509299 ~ 49564784 (+) False LOC110530001
TU813841 other upstream 556476 48760343 ~ 48760740 (+) True G716133
TU813740 other upstream 773052 48537743 ~ 48544164 (+) True G716035
TU811150 other upstream 2547970 46715915 ~ 46769246 (+) True G713574
TU810963 other upstream 2850989 46465398 ~ 46466227 (+) True G713405
TU809392 other upstream 3522667 45793269 ~ 45794549 (+) True G711912
TU814604 other downstream 15363 49332841 ~ 49333772 (+) True G716862
TU814748 other downstream 228734 49546212 ~ 49547085 (+) True G716993
TU815524 other downstream 535909 49853387 ~ 49854192 (+) True LOC118965615
TU815871 other downstream 1068068 50385546 ~ 50393836 (+) True LOC110530019
TU815927 other downstream 1319218 50636696 ~ 50641166 (+) True LOC110530024

Expression Profile