RNA id: TU815307


Basic Information

Item Value
RNA id TU815307
length 1448
lncRNA type intronic
GC content 0.48
exon number 1
gene id G717527
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 49513075 ~ 49514522 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agctgttggtcacagatacctttaaaaaaaaaagttatgtaTGGGTCTGGacaagaaaaccagtcagtatctggtgtgaccatttgcctcgcatagagttgatcaagctgttgattgtggaatgttgtcccactcttcaattgCTGTGCGAagatgctggatattggcgggaactggaacacgttgttgtacatgtcgatccagagcatcccacacttgcttaatgggtgacatgtctggtgagtatgcaggtcatggaagaactgggacattttcagcttccaggaattgtgtacagatccttgcgacattgggccatgcattatcatgctgaaacatgaggtgatggcagcagatggcacgacaatgggcctcaggatctcgtaacGGTATCTCTGTGCCTTCAAATtcccattgataaaatgcaagtgtgttcattgtctgtagtttatgccATAACCCCACCATAGGGCATCATGGTGACATCAGAAAACCGCTAGCCCACACGTCTGCCCGTTAtggttgaaaccgggattcatccatgaagagcacacttctccagtgtgccagtggccatcgaaggtgagaatTTGCCCAATGAAGTCAGttatgacaccaaactgcagtcaggtcaagaccctggtgaggatgacgagcatgtATTTGTGCTTCCCtgagattgggttcaagtctgagcTCTGGCTGTGCCACAAATActatcagagacttgtcccgaagccactactgcTTTGTCGTTGtactggctgtgtgcttagggtcgttgtcctgttggaaggtgaacaatcaccccagcctgaggtcctgagtgctctggagcaggttctcatcaaggatctctctgtactttgctccattcatctttctctcaatcctgactagtctcccagtccctgtcgctgaaaaacaaccccacagcatgatgctgtcaccaccatgcctcaccgtagagatggtgtcATGTttactccagatgtgatgcttggcattcaggccaaagagttaattCTTGGTATGATCAGACAAGAGCATTTTATTTCTCATGGTCAATACTTTAAGTGCTTTTTTGGCAAAACCAAgcaggctatcatgtgccttttactgaggagtggcttcggtctggccactctaccataaaggactgattggtggagtgctgcaaagatgattGTCCTACtagaagattctcccatctccacagaggattctggagctctgtcagagtgaccattgggttcttgggtcacctccctgaccaaggcccttcttccccgattgcccAGTTTGGCCAGGGGGCCCagctcttccatttaagaataatggaggccactgttcaatgctgcagacaatttTTGGTATCTTTCaccagacctgtgcctcgacacaatcctgtctcggagcgctacagacaattccttcgacctcacggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU815204 lncRNA downstream 28024 49483592 ~ 49485051 (-) True LOC110529999
TU815225 lncRNA downstream 136363 49376510 ~ 49376712 (-) True G717452
TU815223 lncRNA downstream 139019 49373563 ~ 49374056 (-) True G717450
TU815219 lncRNA downstream 143143 49369688 ~ 49369932 (-) True G717446
TU815213 lncRNA downstream 153097 49359616 ~ 49359978 (-) True G717440
TU815308 lncRNA upstream 2178 49516700 ~ 49516983 (-) True G717528
TU815311 lncRNA upstream 5632 49520154 ~ 49520498 (-) True G717531
TU815312 lncRNA upstream 7084 49521606 ~ 49521933 (-) True G717532
TU815314 lncRNA upstream 17465 49531987 ~ 49532535 (-) True G717534
TU815319 lncRNA upstream 28689 49543211 ~ 49544233 (-) True G717539
XM_036985541.1 mRNA downstream 21827 49442708 ~ 49491248 (-) False LOC110529999
XM_036985542.1 mRNA downstream 21827 49442708 ~ 49491248 (-) False LOC110529999
XM_036985543.1 mRNA downstream 21827 49442708 ~ 49491248 (-) False LOC110529999
XM_036985546.1 mRNA downstream 22319 49442708 ~ 49490756 (-) False LOC110529999
XM_036985544.1 mRNA downstream 22325 49442708 ~ 49490750 (-) False LOC110529999
XM_021612751.2 mRNA upstream 10216 49524738 ~ 49529686 (-) True LOC110530002
XR_005053024.1 mRNA upstream 62581 49577103 ~ 49578807 (-) False LOC118965614
XM_021612754.2 mRNA upstream 87017 49601539 ~ 49612229 (-) True LOC110530004
XR_002474470.2 mRNA upstream 115055 49629577 ~ 49630769 (-) False LOC110530005
XM_021612756.2 mRNA upstream 120953 49635475 ~ 49647848 (-) False LOC110530006
TU814229 other downstream 724113 48788521 ~ 48788962 (-) True G716488
TU814220 other downstream 730560 48782121 ~ 48782515 (-) True G716480
TU814203 other downstream 751912 48759912 ~ 48761163 (-) True G716463
TU813956 other downstream 896552 48542291 ~ 48616523 (-) True dlg1l
TU813564 other downstream 1223494 48288942 ~ 48289581 (-) True G715865
TU816366 other upstream 271152 49785674 ~ 49837696 (-) True G718489
TU816422 other upstream 352108 49866630 ~ 49889252 (-) False LOC110530011
TU817090 other upstream 1422406 50936928 ~ 50939471 (-) True G719151
TU817704 other upstream 1737833 51252355 ~ 51259019 (-) True LOC110530043
TU819491 other upstream 3246517 52761039 ~ 52761451 (-) True G721275

Expression Profile