RNA id: TU815319


Basic Information

Item Value
RNA id TU815319
length 1001
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G717539
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 49543211 ~ 49544233 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCACCTTTCGGCAGTCTCCCTCCGAGGACAGTGAACTTCTCTGGGCTCCGGAGGAACTCCACCACCTCCTGCAGCTCGTTCTTGGCCTCCTCTACCCCCTTGACGTGCTCAAATGTCACGTTCTTCATCTGGACAGGGTCCACCGAGTCCAGGCCTGATGTGGTTCGGAATCGCACTGTCCAGAATGGTTAGATTAAGGTTCGAAATCACACTGCTCGGATGCAAACACATTCTTAGCTAtggttagttttttttttttcaacaaatCACTGTTTTTTAAGAAGCATTCAGTAAACATCACATCAAGTTCTCGATTACTCATCATCCGAATTGACACACCAAAAGAATGCTCAGCAAATTTGAATGCATCAGCAAAAAGTTAAGGCTCAATCTGGGAGGTTGTTCAATTGCCATTTAAATACATTATATAGGCTGCCCATTTATTTATGAAGAATGGAACTTTAAACAGACAATATACTGCTTCATAAACCATCATGTCACTCTCATGGACTGCATATGAAGTTGACAGTGGTTACacttctccaggcccatccctctgCAGTGAGGAGTGCAGTTGGGCTGAAACGCAAACTCCAGATTGTGGCTTTAAAGTAAAATTCCACCCCAAaacttttggtatttgtttcattcgtccattgttgacataggcccaaaatgttttgcttgtctgCAATCAagtttcaagatatgtaactttaaaaataaatcatccctgtatgatgcattttgcatcatttgatgcattttgcatcatatggGGTTATTTCTGTATACCAatagtttttgggtggagttttcctttaaaaaGTACACACCAAGCTGCATGCCAGAGTACACACCAAGCTGCATGCCAGAGTGAAGGTCTTTGAGCTTGATAAAATGAAAAAGGAGCCTTTACCCGATAGGAAGGGGGTCTTGGAGAGGCCGTAGAGTCCCACCAGCAGCAGGACCAGCAGTATAAACCTCGTCCTCCtcagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU815314 lncRNA downstream 10676 49531987 ~ 49532535 (-) True G717534
TU815312 lncRNA downstream 21278 49521606 ~ 49521933 (-) True G717532
TU815311 lncRNA downstream 22713 49520154 ~ 49520498 (-) True G717531
TU815308 lncRNA downstream 26228 49516700 ~ 49516983 (-) True G717528
TU815307 lncRNA downstream 28689 49513075 ~ 49514522 (-) True G717527
TU815320 lncRNA upstream 565 49544798 ~ 49545015 (-) True G717540
TU815322 lncRNA upstream 2399 49546632 ~ 49546884 (-) True G717542
TU815323 lncRNA upstream 3440 49547673 ~ 49547973 (-) True G717543
TU815324 lncRNA upstream 3983 49548216 ~ 49549071 (-) True G717544
TU815326 lncRNA upstream 6589 49550822 ~ 49551046 (-) True G717546
XM_021612751.2 mRNA downstream 13525 49524738 ~ 49529686 (-) True LOC110530002
XM_036985541.1 mRNA downstream 51963 49442708 ~ 49491248 (-) False LOC110529999
XM_036985542.1 mRNA downstream 51963 49442708 ~ 49491248 (-) False LOC110529999
XM_036985543.1 mRNA downstream 51963 49442708 ~ 49491248 (-) False LOC110529999
XM_036985546.1 mRNA downstream 52455 49442708 ~ 49490756 (-) False LOC110529999
XR_005053024.1 mRNA upstream 32870 49577103 ~ 49578807 (-) False LOC118965614
XM_021612754.2 mRNA upstream 57306 49601539 ~ 49612229 (-) True LOC110530004
XR_002474470.2 mRNA upstream 85344 49629577 ~ 49630769 (-) False LOC110530005
XM_021612756.2 mRNA upstream 91242 49635475 ~ 49647848 (-) False LOC110530006
XM_036985551.1 mRNA upstream 91242 49635475 ~ 49647848 (-) True LOC110530006
TU814229 other downstream 754249 48788521 ~ 48788962 (-) True G716488
TU814220 other downstream 760696 48782121 ~ 48782515 (-) True G716480
TU814203 other downstream 782048 48759912 ~ 48761163 (-) True G716463
TU813956 other downstream 926688 48542291 ~ 48616523 (-) True dlg1l
TU813564 other downstream 1253630 48288942 ~ 48289581 (-) True G715865
TU816366 other upstream 241441 49785674 ~ 49837696 (-) True G718489
TU816422 other upstream 322397 49866630 ~ 49889252 (-) False LOC110530011
TU817090 other upstream 1392695 50936928 ~ 50939471 (-) True G719151
TU817704 other upstream 1708122 51252355 ~ 51259019 (-) True LOC110530043
TU819491 other upstream 3216806 52761039 ~ 52761451 (-) True G721275

Expression Profile