RNA id: TU815327


Basic Information

Item Value
RNA id TU815327
length 200
lncRNA type antisense_over
GC content 0.38
exon number 1
gene id G717547
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 49551887 ~ 49552086 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccgggtttggccggtgtaggccgtcattgtaaataagaatttgttcttaactgatttgcctacttaaataaaggttcaataaataaaaataaaaataaaaaatggatgtTGCTCACGTACCAGGGTCTACTTTGATCTTCCTTAAATACCAGTTGAGGATTTCTGTGCGTCCTTTCACATCTGGTTTGGAGACAGTGACC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU815326 lncRNA downstream 841 49550822 ~ 49551046 (-) True G717546
TU815324 lncRNA downstream 2816 49548216 ~ 49549071 (-) True G717544
TU815323 lncRNA downstream 3914 49547673 ~ 49547973 (-) True G717543
TU815322 lncRNA downstream 5003 49546632 ~ 49546884 (-) True G717542
TU815320 lncRNA downstream 6872 49544798 ~ 49545015 (-) True G717540
TU815329 lncRNA upstream 899 49552985 ~ 49553329 (-) True G717549
TU815331 lncRNA upstream 2067 49554153 ~ 49554369 (-) True G717551
TU815333 lncRNA upstream 4188 49556274 ~ 49556634 (-) True G717553
TU815334 lncRNA upstream 4675 49556761 ~ 49556979 (-) True G717554
TU815336 lncRNA upstream 6779 49558865 ~ 49559082 (-) True G717556
XM_021612751.2 mRNA downstream 22201 49524738 ~ 49529686 (-) True LOC110530002
XM_036985541.1 mRNA downstream 60639 49442708 ~ 49491248 (-) False LOC110529999
XM_036985542.1 mRNA downstream 60639 49442708 ~ 49491248 (-) False LOC110529999
XM_036985543.1 mRNA downstream 60639 49442708 ~ 49491248 (-) False LOC110529999
XM_036985546.1 mRNA downstream 61131 49442708 ~ 49490756 (-) False LOC110529999
XR_005053024.1 mRNA upstream 25017 49577103 ~ 49578807 (-) False LOC118965614
XM_021612754.2 mRNA upstream 49453 49601539 ~ 49612229 (-) True LOC110530004
XR_002474470.2 mRNA upstream 77491 49629577 ~ 49630769 (-) False LOC110530005
XM_021612756.2 mRNA upstream 83389 49635475 ~ 49647848 (-) False LOC110530006
XM_036985551.1 mRNA upstream 83389 49635475 ~ 49647848 (-) True LOC110530006
TU814229 other downstream 762925 48788521 ~ 48788962 (-) True G716488
TU814220 other downstream 769372 48782121 ~ 48782515 (-) True G716480
TU814203 other downstream 790724 48759912 ~ 48761163 (-) True G716463
TU813956 other downstream 935364 48542291 ~ 48616523 (-) True dlg1l
TU813564 other downstream 1262306 48288942 ~ 48289581 (-) True G715865
TU816366 other upstream 233588 49785674 ~ 49837696 (-) True G718489
TU816422 other upstream 314544 49866630 ~ 49889252 (-) False LOC110530011
TU817090 other upstream 1384842 50936928 ~ 50939471 (-) True G719151
TU817704 other upstream 1700269 51252355 ~ 51259019 (-) True LOC110530043
TU819491 other upstream 3208953 52761039 ~ 52761451 (-) True G721275

Expression Profile