RNA id: TCONS_00035720


Basic Information

Item Value
RNA id TCONS_00035720
length 871
RNA type mRNA
GC content 0.39
exon number 6
gene id XLOC_018121
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 27222849 ~ 27225878 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGACCATTTGGCACAAAGGATACTTTAAGAACTGCAATTTCAGAACTAACATTTATGGTACATTTGCTTCCCACAGAAGCCGAAAACATACTCCTCACTCATTGCATGACTTCAAGGCAGACATAATAAAAAGGTATGTATGTTCATTCAATGCAGATCAACACAGTGATGTGGAAGGTCAAAGTGGGGATCTGTCTGATGAATGTCAAGATGACAATAATGATGTGACAGACCTGCCaaactgcatagaaaaaaaatagctttgttgtttctaaaactggaGAGCACTTTTAATGTATCTTACAGGTGTATAGAAGAGGTTgttaaagagttaaattttatatCTCGATCAGCATCTGGACCCATCATCAAAGTTGTTGCAGATAAAATGGGCAAGAAATAAGGGATATCTTGGAGCGCTGGCCTGCATTATCAGATGCAACACAGATAAATGAAGAATTCAAGAGGATAACCACTGTAGGTCTTGAATCCACATTTATGGCCAAACTTGACAAATGCAGCCCAAAAGTAATGGACCTGGCCTCATCAAGGGGAGGAGCTAAAGGGGAAAGAATCAGAAGGATTAAGGATATGCTTCTTGAGAACAATGCAGTTGAAGTATGGAGAGAAGTAGCCATTCACTGTCTTGTTGTCTATCTTGGAGAGAAAGAAGAGGATCTTTTCAAGGAGTTTGCTAATACACAAGGAATTGAGGCAGACCTTAAAAAGCAAGTGATGAAAATTGCCATCATTGGTGATCTGTCAACTATGGAATTAAACCACAAGACGGGACCCATCATTGTTGAGGGAATCAGAATCCTGATTGGAATGGATATCTCAAGGTGTTGTGCTCTGCTAACGGGCATAATAT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000149732

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035713 lncRNA downstream 260665 26959533 ~ 26962756 (-) True XLOC_018116
TCONS_00036848 lncRNA downstream 287650 26932068 ~ 26935771 (-) False XLOC_018115
TCONS_00035712 lncRNA downstream 287650 26935002 ~ 26935771 (-) True XLOC_018115
TCONS_00036847 lncRNA downstream 514895 26631070 ~ 26708526 (-) True XLOC_018112
TCONS_00036846 lncRNA downstream 514939 26631070 ~ 26708482 (-) False XLOC_018112
TCONS_00035725 lncRNA upstream 77970 27303848 ~ 27304286 (-) False XLOC_018122
TCONS_00036849 lncRNA upstream 888886 28114764 ~ 28154496 (-) False XLOC_018129
TCONS_00036850 lncRNA upstream 888886 28114764 ~ 28164127 (-) False XLOC_018129
TCONS_00036851 lncRNA upstream 888886 28114764 ~ 28164152 (-) True XLOC_018129
TCONS_00036852 lncRNA upstream 1007399 28233277 ~ 28233592 (-) True XLOC_018130
TCONS_00035718 mRNA downstream 33028 27114874 ~ 27190393 (-) True XLOC_018120
TCONS_00035717 mRNA downstream 70926 27114874 ~ 27152495 (-) False XLOC_018120
TCONS_00035716 mRNA downstream 131131 27090908 ~ 27092290 (-) True XLOC_018119
TCONS_00035714 mRNA downstream 137278 27049523 ~ 27086143 (-) True XLOC_018117
TCONS_00035711 mRNA downstream 285968 26931496 ~ 26937453 (-) False XLOC_018115
TCONS_00035723 mRNA upstream 69823 27295701 ~ 27311675 (-) False XLOC_018122
TCONS_00035724 mRNA upstream 71154 27297032 ~ 27311675 (-) False XLOC_018122
TCONS_00035727 mRNA upstream 90800 27316678 ~ 27325258 (-) False XLOC_018123
TCONS_00035728 mRNA upstream 98687 27324565 ~ 27330383 (-) True XLOC_018123
TCONS_00035729 mRNA upstream 145516 27371394 ~ 27381691 (-) True XLOC_018124
TCONS_00035715 other downstream 169201 27054095 ~ 27054220 (-) True XLOC_018118
TCONS_00035701 other downstream 634511 26584112 ~ 26588910 (-) True XLOC_018111
TCONS_00035698 other downstream 672188 26550661 ~ 26551233 (-) True XLOC_018110
TCONS_00035691 other downstream 712148 26502486 ~ 26511273 (-) False XLOC_018108
TCONS_00035690 other downstream 734476 26480428 ~ 26488945 (-) False XLOC_018108
TCONS_00035726 other upstream 82538 27308416 ~ 27311615 (-) True XLOC_018122
TCONS_00035747 other upstream 1385394 28611272 ~ 28612322 (-) True XLOC_018136
TCONS_00035753 other upstream 1606884 28832762 ~ 28842571 (-) False XLOC_018139
TCONS_00035760 other upstream 1646007 28871885 ~ 28875874 (-) False XLOC_018141
TCONS_00035770 other upstream 1821305 29047183 ~ 29050045 (-) True XLOC_018144

Expression Profile

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