RNA id: TU816462


Basic Information

Item Value
RNA id TU816462
length 239
lncRNA type intronic
GC content 0.38
exon number 1
gene id G718581
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 49924642 ~ 49924880 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTCAGCTTCATTTAAATGAGCACCTCTGCACGTCATTTGGCATGTAATCAATTGTGTTTCATCATTCAAATGTGTCAAATCACTTGAAGTAAGTATGTAAAATGATCTATTGCTACAGTACCACACACTTTCATTATGAAGTGAATTCCAGAAATGGGACTGTAAAATAAACTGGATCGACCCCATCCCACATAATCAGTGTACATcatcttgtctctttctctcttcctcccaccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU816461 lncRNA downstream 314 49924061 ~ 49924328 (-) True G718580
TU816426 lncRNA downstream 3501 49920943 ~ 49921141 (-) True LOC110530011
TU816427 lncRNA downstream 59909 49864505 ~ 49864733 (-) True G718546
TU816425 lncRNA downstream 63859 49859964 ~ 49860783 (-) True G718544
TU816419 lncRNA downstream 69243 49855104 ~ 49855399 (-) True G718541
TU816471 lncRNA upstream 9953 49934833 ~ 49935036 (-) True G718590
TU816475 lncRNA upstream 18836 49943716 ~ 49944228 (-) True G718594
TU816479 lncRNA upstream 22888 49947768 ~ 49948123 (-) True G718598
TU816514 lncRNA upstream 70046 49994926 ~ 50001193 (-) True G718625
TU816554 lncRNA upstream 126565 50051445 ~ 50059575 (-) True G718663
XM_021612767.2 mRNA downstream 3142 49866273 ~ 49921500 (-) False LOC110530011
XM_021612765.2 mRNA downstream 15482 49866272 ~ 49909160 (-) False LOC110530011
XM_021612766.2 mRNA downstream 15482 49866272 ~ 49909160 (-) False LOC110530011
XR_005052889.1 mRNA downstream 38416 49881643 ~ 49886226 (-) False LOC118965522
XR_005052890.1 mRNA downstream 38416 49881643 ~ 49886226 (-) True LOC118965522
XM_021612768.2 mRNA upstream 40034 49964914 ~ 49970082 (-) True LOC110530012
LOC118965625 mRNA upstream 58509 49983389 ~ 49986205 (-) True LOC118965625
XM_021612771.2 mRNA upstream 168617 50093497 ~ 50095929 (-) True LOC110530015
XM_021612772.2 mRNA upstream 412851 50337731 ~ 50366270 (-) True LOC110530016
XM_021612779.2 mRNA upstream 488100 50412980 ~ 50434787 (-) False LOC110530021
TU816422 other downstream 35390 49866630 ~ 49889252 (-) False LOC110530011
TU816366 other downstream 86946 49785674 ~ 49837696 (-) True G718489
TU814229 other downstream 1135680 48788521 ~ 48788962 (-) True G716488
TU814220 other downstream 1142127 48782121 ~ 48782515 (-) True G716480
TU814203 other downstream 1163479 48759912 ~ 48761163 (-) True G716463
TU817090 other upstream 1012048 50936928 ~ 50939471 (-) True G719151
TU817704 other upstream 1327475 51252355 ~ 51259019 (-) True LOC110530043
TU819491 other upstream 2836159 52761039 ~ 52761451 (-) True G721275
TU820029 other upstream 3538302 53463182 ~ 53463764 (-) False LOC110529122
TU820769 other upstream 3573268 53498148 ~ 53499730 (-) True G722459

Expression Profile