RNA id: TU816479


Basic Information

Item Value
RNA id TU816479
length 326
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G718598
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 49947768 ~ 49948123 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTCAAAATCAATGgacatttagcagacgctgttaGGTTTTATTAGGTtttagtgccttgctcaagggcacattgacagaagGTAATGTTCACCAAGCCTTTTTTTTGCTGGATCTTTGTAGAAATGTTACCCATTTGAATCATACTCATACTCAATCATACTCATACTCAATCATACTCATACTCAATCATACTCATACTCAATCATACTCATACGAAAagtaatccacagataaaaggagaAACCTAGTTAGTTTTTATGTAGTTTTCTTTGATTAATCTCTCCTCGTTCATCTTTCAATCTCCTACGTGGGTTAGTATACTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU816475 lncRNA downstream 3540 49943716 ~ 49944228 (-) True G718594
TU816471 lncRNA downstream 12732 49934833 ~ 49935036 (-) True G718590
TU816462 lncRNA downstream 22888 49924642 ~ 49924880 (-) True G718581
TU816461 lncRNA downstream 23440 49924061 ~ 49924328 (-) True G718580
TU816426 lncRNA downstream 26627 49920943 ~ 49921141 (-) True LOC110530011
TU816514 lncRNA upstream 46803 49994926 ~ 50001193 (-) True G718625
TU816554 lncRNA upstream 103322 50051445 ~ 50059575 (-) True G718663
TU816538 lncRNA upstream 120390 50068513 ~ 50071983 (-) False G718648
TU816539 lncRNA upstream 120390 50068513 ~ 50071983 (-) True G718648
TU816673 lncRNA upstream 292878 50241001 ~ 50241249 (-) True G718780
XM_036985558.1 mRNA downstream 10767 49866274 ~ 49937001 (-) False LOC110530011
XM_021612767.2 mRNA downstream 26268 49866273 ~ 49921500 (-) False LOC110530011
XM_021612765.2 mRNA downstream 38608 49866272 ~ 49909160 (-) False LOC110530011
XM_021612766.2 mRNA downstream 38608 49866272 ~ 49909160 (-) False LOC110530011
XR_005052889.1 mRNA downstream 61542 49881643 ~ 49886226 (-) False LOC118965522
XM_021612768.2 mRNA upstream 16791 49964914 ~ 49970082 (-) True LOC110530012
LOC118965625 mRNA upstream 35266 49983389 ~ 49986205 (-) True LOC118965625
XM_021612771.2 mRNA upstream 145374 50093497 ~ 50095929 (-) True LOC110530015
XM_021612772.2 mRNA upstream 389608 50337731 ~ 50366270 (-) True LOC110530016
XM_021612779.2 mRNA upstream 464857 50412980 ~ 50434787 (-) False LOC110530021
TU816422 other downstream 58516 49866630 ~ 49889252 (-) False LOC110530011
TU816366 other downstream 110072 49785674 ~ 49837696 (-) True G718489
TU814229 other downstream 1158806 48788521 ~ 48788962 (-) True G716488
TU814220 other downstream 1165253 48782121 ~ 48782515 (-) True G716480
TU814203 other downstream 1186605 48759912 ~ 48761163 (-) True G716463
TU817090 other upstream 988805 50936928 ~ 50939471 (-) True G719151
TU817704 other upstream 1304232 51252355 ~ 51259019 (-) True LOC110530043
TU819491 other upstream 2812916 52761039 ~ 52761451 (-) True G721275
TU820029 other upstream 3515059 53463182 ~ 53463764 (-) False LOC110529122
TU820769 other upstream 3550025 53498148 ~ 53499730 (-) True G722459

Expression Profile