RNA id: TU816539


Basic Information

Item Value
RNA id TU816539
length 3407
lncRNA type antisense_over
GC content 0.42
exon number 3
gene id G718648
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 50068513 ~ 50071983 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTCTATATTTATTGCAATGATAAGATACAGATATACAATTAAATTATATTCCAATATTGCAAGAGACAGTCTCTCTGATATTGATCCAAATATGGACAACTACATGACTAAAGACATTTTGACCAGATAGAACATGTATTTTGATGAGGGGAAAAGCAGCATAGTTTAATACTACAATATACAACAGACTGTGCACGAAGAACACTCAAAAGAACAATTAGAGATTTTCATGAAAAAGCCCAAATTCATAATACAGCTACTGGCACCTCGCTTTCCAGAAGACATCAGGAAACAGAAAAGCAATTAAAACAAACATACTtagaaaaagacaaaaaaaagctaCACGATGTGCAGTTGTTAGTAGTATACGTGTCCTGTAGAAGAGCTACACGCTGTTGAGAAGAGTTCAGGGAAACACGTTGATGAAGAAACCAGCTGGAGGCCTAAAAATCGGAGGTTAACATGCTCTTCGAAGAGGAAAGCAAGACTGAGTACTTGTACCCCTTTTCACACTAGTGAGCCTGAACAGAGATGCACCGCCTGTCTGATTACACATCCAGCATAGTTCCAGGAACAAGCCGGCACTACAAAATAGTGTGATATGAGCGTCTCGAAGATACTCCTCAGTCGACTACATTGGGTCGATCTGTGTAGGGTGCGTGGTATCAAAGCCCTCAAGTGACTCTCCCCCCCCCTTGCTCTCACACGTTCTGCTCTACCATTCCACTGTGGGGAGAACATTCCACCCAGAACATTTTGTGTGGAAGAGCAATATAAATGTTATGCAAGCCACTGCCAATGAGTTTCTCAACCACTAGTTAATCATTCACTATTCTTACGTGACTTAAAGTAAGTAGCCAAATGGACAAACTAGCTACATTACTCTTCACACATTCAAAGAAATGACAGTGTAAAATCGATcaatataaaataaaacaaaatctgATCCACACATAACATAATCCACATTTCTAGTGTTTGAAGGTACCCAATAATGAGTACAGTACACTCTTGACAATATACCTATTGGAGGTCAAAATTATAGCAAAAAAAgtttaataaaaatacaaataaattatgAAAATAAGTCTTGATACCAAAAACCTAAACAAAAATGTTTCTGTTCAGGTTGAACAAAGTAGGTTCATAATTTCTCAGactaagtttgtgtgtgtgtatatatatatttatataaacatatatatacacacacacttgatatATCAATAGATATCATTATATAAATGATACATTTATCTATTTTATCCTCACTATGAGTAAAAAATGTGACCTTACGAATGGACAGTCTTGGACCACAGCCCACATATCGCAACAATTGAGGAGAATTAGACCACGACCCCATTTGGTTTCAAATGGAGTCTCCATGCATTCACAGGGGTCTTCATCGTCGTCTGTTAGCTTGACTAGAATACCAATGAAGGCAACACAACAAACGCAATCATGAAAGGATGGGCATCCGAGTTGAACTGACAACAAGCCTACCATCTTCATTATACGATAGTTTGTTATAATAGTATTAAGTACACTGTCTGCTTTGCATGGCTTAAATAGAACTGAAGGGAGAATGGGATCGAAGTCTACAAACCAATGCCCTGGCTCCTATACTGCTCTGTATTCAAAAGGTTTGGAATTTGACactagttaaaaaaaaatgaataattgTACCAAAATCCCTTGCTGACACTTTTGACATGTCTTCTCGTATGAAAACAGCATGCATTGCAACAACAATTTACGTGTTTGGCACTATTTCATTTTGacgcctcattctaaaatggtgCATACAAACCTCAAACCCTTTTTCCATTCTATCTTTGCTGCCTGCACATGTGTGGCCTCAAATAAAGTCATTCTAGTAAGGAATATTTTAGATGATCAGTTTTACACTTAAAATTAGTGCCACTGCTCATGGACACTACTCTTATGTAATGGACATGACTCTTGCGAAACTCAGATTttatgtgtgtgcagaactgcaCGATGATCATGATCAACCATACAAACAAGCATTTCTCATTGAAAACAGAAagcactgcaaaaaaaaaaaaaaaaacaaggctgGGGGAGAAACTACAGATTCTGGTCCCTCCAGATTAGTTATATTGGCGCAGCCAGCGGTTGGTCAATTGTAACTTGATGGCTGCCTACGAGAGATCAGATTCTGGCTTTAGTCCAAATACAAGAGCTGAACCGTGTAGAGGGCCAGCTGCCACTGCTAGTACAGGACACTTGGCCCAGTTGTGTGACAATGGTCCAAAGGAAAGGTTTGGTTTGAGTAGGGAAAACGTGCCTACTGGACACAACACTGAGCTTAACTTTACTTTGATTGTACCAATCACACATCTTTCATAAGACCACAGTCAGGATTTGAGGGACAGGTAGAGAAGATGGCAGTATTTATCCTGGCAAAACAAGGATTCCATTGTTCTAGAATTCCCTCATCTGTGGAGATTGACTAAAAACGTACACATAACATGTAGAGCAGATGAGTCTTTCTGAACTAGGATGATATGGGATAAAGTCATAACGTAAGTACCAAAAAATTGGGAAAACATCGGGAGAACAATCGAGACAACTTCCTCAGACAAGCACATCTGTTAAGTTAGTTTGCATTTCTCAGTTGAAATAATTTCAGAACCACAATAAggcgttttttttcttctcttctcttttccatTGTCATAGCCGTTTGCTTCGTTTCACCGGTGTCAATACCAAGACAGACGTGGTACAGTATAGTTAGTGGAAGATCGGAGCAGACAAGATGGGGAGGTGTCTCCTCAGCGAGGTTGAGAGAGGACCTGGAGGAGATCCttcagaggaggagaaggaggtggtggtagtgataaTGTTTATGTTTGAACAGACAAGGGCTTTGCCTCACcgtctcccttctcctccactcctctttccCCCGCTCCTTCCGTGTGCTGCTCCAGCTCTTCACGGGTGATCATCTCAAAGTCGTTTCCGTTGCTGTGCTGCGAGCCCTCGTCCTCCCGGCGGTCGCTGTCCGTGTCTGAGTGGCGCTCGGCGGCGCTCGTCAACGTCCCAGCCGCCTCAGTCACCTCGTTTTCTTCCGTCCCTTTCGGCGCTGTGCCCTCACCCTCTTCTAtttccacctctccttcctcctcttcctccccaccaTCACCCTTCTCCTCGCTGTCCGACTTCTGGGCCTTGGCTGCGTCTGCATCGGTGGATTTGCCTTCCGTCTTGTCCGGGCTCTTCTTGCTGTAGCCCCGTGGGCCCTTGTAATCGTGCGTGTAGAGCGGGCGGAAGGAGTCGATGAAGCCCACGTCGGCAGTCAGGTTGGGCAGGAACCAGAAGTGGTGGCGACCGCCCGTCACCAGCCAGATGATCAGGAACAGGATGCAGCGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU816554 lncRNA downstream 8938 50051445 ~ 50059575 (-) True G718663
TU816514 lncRNA downstream 67320 49994926 ~ 50001193 (-) True G718625
TU816479 lncRNA downstream 120390 49947768 ~ 49948123 (-) True G718598
TU816475 lncRNA downstream 124285 49943716 ~ 49944228 (-) True G718594
TU816471 lncRNA downstream 133477 49934833 ~ 49935036 (-) True G718590
TU816673 lncRNA upstream 169018 50241001 ~ 50241249 (-) True G718780
TU816674 lncRNA upstream 169681 50241664 ~ 50241894 (-) True G718781
TU816676 lncRNA upstream 177875 50249858 ~ 50250116 (-) True G718783
TU816677 lncRNA upstream 178768 50250751 ~ 50251056 (-) True G718784
TU816695 lncRNA upstream 225417 50297400 ~ 50383091 (-) False G718798
LOC118965625 mRNA downstream 82308 49983389 ~ 49986205 (-) True LOC118965625
XM_021612768.2 mRNA downstream 98431 49964914 ~ 49970082 (-) True LOC110530012
XM_036985558.1 mRNA downstream 131512 49866274 ~ 49937001 (-) False LOC110530011
XM_021612771.2 mRNA upstream 21514 50093497 ~ 50095929 (-) True LOC110530015
XM_021612772.2 mRNA upstream 265748 50337731 ~ 50366270 (-) True LOC110530016
XM_021612779.2 mRNA upstream 340997 50412980 ~ 50434787 (-) False LOC110530021
XM_036985563.1 mRNA upstream 340997 50412980 ~ 50434788 (-) True LOC110530021
XM_021612797.2 mRNA upstream 593648 50665631 ~ 50674317 (-) False LOC110530027
TU816422 other downstream 179261 49866630 ~ 49889252 (-) False LOC110530011
TU816366 other downstream 230817 49785674 ~ 49837696 (-) True G718489
TU814229 other downstream 1279551 48788521 ~ 48788962 (-) True G716488
TU814220 other downstream 1285998 48782121 ~ 48782515 (-) True G716480
TU814203 other downstream 1307350 48759912 ~ 48761163 (-) True G716463
TU817090 other upstream 864945 50936928 ~ 50939471 (-) True G719151
TU817704 other upstream 1180372 51252355 ~ 51259019 (-) True LOC110530043
TU819491 other upstream 2689056 52761039 ~ 52761451 (-) True G721275
TU820029 other upstream 3391199 53463182 ~ 53463764 (-) False LOC110529122
TU820769 other upstream 3426165 53498148 ~ 53499730 (-) True G722459

Expression Profile

TU816539 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 5.
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TU816539 Expression in each Bioproject

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TU816539 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) TU190047 True 3375 lncRNA 0.40 2 NC_035912.1 10244974 ~ 10248465 (-)