RNA id: TU816694


Basic Information

Item Value
RNA id TU816694
length 2838
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G718798
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 50297400 ~ 50383091 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGTGTCATAAATATGATTTATTTTCCAGAACTGTAAAAATGTGACAAGTAACAaaaatacagtatttacagtacagATGTGCTGAGAGTCAATGTGACTAAGATCCTGGTGATAACTGCTGTCATTAAGGTGGATGCCTGTGTGCTGTCCATCCAATTCCTCTAAACTTCATACCTGGTTATATTCAAACTTAAGATCTGCACGTTTAACACAAATTTGACATGAAAGAATTATGTACGTTTTGCATATTTACGAGGTTTGTGCGCAGATCACAGGTATGAATACCGCCCACCATTAATTCATAGTTTCCAATGCTTAAACAAGAACTCTATAGGATTCCACAAATGCATGTAACAATAGGAGGATGTTATCAATCAATTTAGCCCAAAAATTAGAACGCTAAACGGAGTATAAAAATGTTTGACAATTCATTTGGTTCCTTGTGTCCCAAAGCCTTTAATGCTGAAGAGGAGAAGCAAGTTCTTTTTAGATTAGCTATAAGATAAACAGTGGCTTAGAGTCTATTTAATCTACGTGGTCCCACTGTGCAGTCGACAGAAGAGACCTGACTAAACTGGCCTCCTAAATCTCCTTAAGGCCTTGTTGTCAGGGACTGTCAGTCACATGTATCTTTGCCAAAGCTTGGTCAATGTCTTATTTCTGTCCATACGTCTTGTGTTTGTTCTCAGAGGAAGTTGCCTGTTTCTGAGgtggctgtagtggtgggggtggagcGAATGGAGATCTGGGTGGATCGGAGGTAGTAGGAGGCCCCTCTGGTGGGCTTCCAGTGGATTCCCCTCCTACACTCTGAACGTCCCTTGGATCTCACGTGGATGTATCTCCCGTTCAGATTGGTGTCTCCACAAGCGTTGAACCACCAGCCACCTGCGAAAGCCCAGAGGATTAGTTCAACTTGATGCTGGTGTGAAAAACAGCAAACCCCATTCAAACTAATGTTCCATCAAACCATATTCTTCATAAATTAGATGAAAATCTTTCAAGAAATAATTTAATTCAGAACAAACCCTGTACTTGAGCCTCACGATAAACCATGCATCCATAAAATGTTGTCCTCCCCAGTCCCCACTACTGTACCTGTGTAGGTGTAAGCGCAGTGTGAGTCTTCAAGGTTGTCATTGTCCCGGTCCTTAGTGGAGAACTTCATACCGGTATGGTTGCTCATTGCATCAGGCAGATTTCCGGATGCCTGTGAGAGGTGGATAGTATAGTGGGCCTCTGGTCCATCCAGAGAGAAGTTGTATTCGATGAAGCGTTTGCCCTGTTTCCAGTCCTCCAGTTGGATGTTCAGGAAAGAGTCACCTTGACTAGCCAGGGAGTGGACCTTCTTCAGACCCAGCCAGAACTCCCCTGGTAACACAGACAAATCAACAAGGCTCagtgctgtacacacacacacacaggcacatgagGTGATGACAGCATCAGTGCTTTAATAAAAGCATTGAGTACTCTGGCCTGGTGCACTGGTCATGAGAAAATACACGTTGCACCTCACAACTCGATCACTCACCTTGAAAGTCTCCAAATCCGTTTTCAAACTTCTCCCAATTCTGATCGAAATTCACGGACCCATCCTTCCTTCTTTGGATTATAGTAGCCCCTCCATCTGCAGAAAGGAAATAGGAAATACTTCATCAATAAATATACATTAGTACACAACATCGGCACTACTCGTTGTCTGTCTTACCTTGATCCATGTCACAGTAGGCCATGAAGGGCTCGGATTGGTTAGGCTTGATGGTGTACATTCCACTGGCTCTCTCGCCCCTGGTAAATAGCTCACAGCAGTCTGATGGGAGATCTGTAGCACACAACCACACTCACAGTCAATCAGCAGCACTGAGGGGTGATGGATCAATCCCTCAAACATTGTGTTTTGTAGGGCCCCTAAAACGGTAACTGTTGTCAAAGAATGAGCTAAAAGGAATACAAATCAACAAATGATCATGACTCTTTTAAGCCACCTTACCTGTCATGTTGAAGCTGCCATTTGCAGAGGTGTTGGTCAGATACCCAGTGAGGTCCGGCGTGACAGACTGGAAGTTGTCAGATGGTTTCTCAATGGTCTCTTGCATGGAAGGGTTATAGGGGAGCTAAAAATGTGAAGGAATAATGTTGTGCTATAAAAATGTAGTCAATTGCCTGCTGTCATGATTGGAAGACTGTAAGGCTCAAGCTACATCATTTGTTGCACTATAGCAGCAACTACCTTCTCCTCCAGAGTCTTGATCTTGCTCCTCTGCTGAACAAGCTGGCCGCTCAATTTCTCCTCCAGCCCGCCCACCTTGCTTTGAAGCTGGCTACGCTCCTGCAGTATGCTCTCCACCTTGGAGTTGATCTCCAGCGATAGGCTCTTGATCTCCTCGTTGTTGGCCTTGAGTACTACCGTAGTCTTCTtcaactcctcctcttcctccttgatCTCGCTAGCCAGCACAGAGAGCTGGTTGAAGGAGTGGTCGAATATGTTGAGTTTCTGGAAGATGTCATTGATCTGGCCCTTGGTCTTGTGGACAAAGTCCCTGAGGCTGTGGCCAAGCTGGAGGAGACCATTGGCCAGGAGACGCACGTCGTCCAGAGCGGCGAAACGGGAGCGGGCCTCGACGGCGGGAACCTGAAGGAGGGGAGGGTCTTCGGACATGGGCTCCTCCTTGGTGCATAGGACCATTGTCCAAGAAGCCACAAGTACGAACATAAAGGTTAGCGTTAGCTTCATGATGTTGGTTGTTTCTGTCTTTAGACCGTCTTGTGTTGTTGGTAGAGCTGGCCAGCCGGCCACTTGAGTCCCCTCTTCCCTTGAAAAGACGCCACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU816677 lncRNA downstream 128726 50250751 ~ 50251056 (-) True G718784
TU816676 lncRNA downstream 129666 50249858 ~ 50250116 (-) True G718783
TU816674 lncRNA downstream 137888 50241664 ~ 50241894 (-) True G718781
TU816673 lncRNA downstream 138533 50241001 ~ 50241249 (-) True G718780
TU816539 lncRNA downstream 307799 50068513 ~ 50071983 (-) True G718648
TU816849 lncRNA upstream 142384 50525475 ~ 50525714 (-) True G718945
TU816897 lncRNA upstream 188217 50571308 ~ 50571740 (-) True G718986
TU816835 lncRNA upstream 305149 50688240 ~ 50714007 (-) True G718931
TU816971 lncRNA upstream 331491 50714582 ~ 50714934 (-) True G719056
TU816969 lncRNA upstream 333068 50716159 ~ 50718605 (-) True LOC110530033
XM_021612772.2 mRNA downstream 13512 50337731 ~ 50366270 (-) True LOC110530016
XM_021612771.2 mRNA downstream 283853 50093497 ~ 50095929 (-) True LOC110530015
LOC118965625 mRNA downstream 393577 49983389 ~ 49986205 (-) True LOC118965625
XM_021612768.2 mRNA downstream 409700 49964914 ~ 49970082 (-) True LOC110530012
XR_005052889.1 mRNA downstream 493556 49881643 ~ 49886226 (-) False LOC118965522
XM_021612779.2 mRNA upstream 29889 50412980 ~ 50434787 (-) False LOC110530021
XM_036985563.1 mRNA upstream 29889 50412980 ~ 50434788 (-) True LOC110530021
XM_021612797.2 mRNA upstream 282540 50665631 ~ 50674317 (-) False LOC110530027
XM_036985586.1 mRNA upstream 282573 50665664 ~ 50674317 (-) True LOC110530027
XM_036985589.1 mRNA upstream 295081 50678172 ~ 50685211 (-) False LOC110530028
TU816422 other downstream 490530 49866630 ~ 49889252 (-) False LOC110530011
TU816366 other downstream 542086 49785674 ~ 49837696 (-) True G718489
TU814229 other downstream 1590820 48788521 ~ 48788962 (-) True G716488
TU814220 other downstream 1597267 48782121 ~ 48782515 (-) True G716480
TU814203 other downstream 1618619 48759912 ~ 48761163 (-) True G716463
TU817090 other upstream 553837 50936928 ~ 50939471 (-) True G719151
TU817704 other upstream 869264 51252355 ~ 51259019 (-) True LOC110530043
TU819491 other upstream 2377948 52761039 ~ 52761451 (-) True G721275
TU820029 other upstream 3080091 53463182 ~ 53463764 (-) False LOC110529122
TU820769 other upstream 3115057 53498148 ~ 53499730 (-) True G722459

Expression Profile