RNA id: TCONS_00035725


Basic Information

Item Value
RNA id TCONS_00035725
length 345
lncRNA type retained_intron
GC content 0.44
exon number 2
gene id XLOC_018122
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 27295701 ~ 27311675 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGAACAATGTGGAAATCTGTGAGATGCTGATGAAAGCTGGAGCCAAAGTCAGCTTGCCTAACAAGTACGGAATCACTCCTATCTTTGTAGCGGCTCAAAGTGGAAAAGTGGAAGCACTTcgcatgcttttaaaaaatgGCGCTGATCTCAACAGTCAGGCCTCAGATGGAGCCACAGCGCTGTATGAGGCCTGTAAAAATGGTCATGAGGACATTGTAGAGTTCCTTCTCTCTCAAAATGCAGATGCCAACAAGGCAGGAAAAACAGGACTCTTGCCGATTCATATTGCTGCCCAGCGTGGCAAAGATGGGTATGATTTAACAGTACAGAAATATAAAGTATTT

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0000151 ubiquitin ligase complex cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5355 Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within intracellular signal transduction. Predicted to be part of ubiquitin ligase complex. Orthologous to human ASB2 (ankyrin repeat and SOCS box containing 2).

Ensembl:

ensembl_id ENSDART00000153184

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035713 lncRNA downstream 341092 26959533 ~ 26962756 (-) True XLOC_018116
TCONS_00036848 lncRNA downstream 368077 26932068 ~ 26935771 (-) False XLOC_018115
TCONS_00035712 lncRNA downstream 368077 26935002 ~ 26935771 (-) True XLOC_018115
TCONS_00036847 lncRNA downstream 595322 26631070 ~ 26708526 (-) True XLOC_018112
TCONS_00036846 lncRNA downstream 595366 26631070 ~ 26708482 (-) False XLOC_018112
TCONS_00036849 lncRNA upstream 810478 28114764 ~ 28154496 (-) False XLOC_018129
TCONS_00036850 lncRNA upstream 810478 28114764 ~ 28164127 (-) False XLOC_018129
TCONS_00036851 lncRNA upstream 810478 28114764 ~ 28164152 (-) True XLOC_018129
TCONS_00036852 lncRNA upstream 928991 28233277 ~ 28233592 (-) True XLOC_018130
TCONS_00036853 lncRNA upstream 963244 28267530 ~ 28269241 (-) False XLOC_018131
TCONS_00035720 mRNA downstream 77970 27223421 ~ 27225878 (-) False XLOC_018121
TCONS_00035719 mRNA downstream 77972 27222849 ~ 27225876 (-) False XLOC_018121
TCONS_00035721 mRNA downstream 78784 27224046 ~ 27225064 (-) False XLOC_018121
TCONS_00035718 mRNA downstream 113455 27114874 ~ 27190393 (-) True XLOC_018120
TCONS_00035717 mRNA downstream 151353 27114874 ~ 27152495 (-) False XLOC_018120
TCONS_00035727 mRNA upstream 12392 27316678 ~ 27325258 (-) False XLOC_018123
TCONS_00035728 mRNA upstream 20279 27324565 ~ 27330383 (-) True XLOC_018123
TCONS_00035729 mRNA upstream 67108 27371394 ~ 27381691 (-) True XLOC_018124
TCONS_00035730 mRNA upstream 79852 27384138 ~ 27390258 (-) True XLOC_018125
TCONS_00035731 mRNA upstream 403480 27707766 ~ 27711970 (-) True XLOC_018126
TCONS_00035722 other downstream 77970 27224812 ~ 27225878 (-) True XLOC_018121
TCONS_00035715 other downstream 249628 27054095 ~ 27054220 (-) True XLOC_018118
TCONS_00035701 other downstream 714938 26584112 ~ 26588910 (-) True XLOC_018111
TCONS_00035698 other downstream 752615 26550661 ~ 26551233 (-) True XLOC_018110
TCONS_00035691 other downstream 792575 26502486 ~ 26511273 (-) False XLOC_018108
TCONS_00035726 other upstream 4130 27308416 ~ 27311615 (-) True XLOC_018122
TCONS_00035747 other upstream 1306986 28611272 ~ 28612322 (-) True XLOC_018136
TCONS_00035753 other upstream 1528476 28832762 ~ 28842571 (-) False XLOC_018139
TCONS_00035760 other upstream 1567599 28871885 ~ 28875874 (-) False XLOC_018141
TCONS_00035770 other upstream 1742897 29047183 ~ 29050045 (-) True XLOC_018144

Expression Profile

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