RNA id: TU816988



Basic Information


Item Value
RNA id TU816988
length 1229
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G719069
representative False

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 50736259 ~ 50738316 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aatcacacagaattacacatacacataattaaatcgtAACTCGATttcaaattacgtcataaaggaaaaagtccctagcgggcggaacagatatgacagctggttacacaaaagaaaaaggctgggtttgagtgaaagagcgggaagactgaggaacaaagggcgaagctgtgctatcgtaaatacagaatcttatgcattctaaattaccgcccatttggaaaaggaaaatgcaataaatatttactctgagctgcgcttcggtaggttggtggtagatggaaggccgtgttgcccaactgagtcctttgtcctttgaagaatgtctctgctggtaaattggatacgttgtagtaatgtcgttatgtggtagacgggatactctgtctgttccttcctaacctgcattTGCaactgctgttgctaactcaacggctaggaggtatcacttctgtagtgaataagagttcaaagtacataccattcgcaaccaaagctcacgctgatgttggcttcgttctgtagttatctgaaccattctgacatcggaccgtcgtcctcacatcctcggaacaggaggttacattgtcgtcaaggctttatataggaagggagaggagggcgtgtttgaaaagttttatagcccatgtcccttcacaggggcgggccactgattgagcatagCCCTAACcgtatgaaaacccaaatctcacattttagaagctaaaatcacatttcatcccatcacgaataatttaatattcaaacatttaaattgaacaacaattccatgtgaatctgataactctgatgtgtagactttccactgtagagtttgtcatcttatcattgtctcagatgacaaccgaactgacatcatattcattaagtaccaccgcatatgttcaattggttggaataccagaatatagttcatttcccaccaccttctgatgttcccagaatctctatgttaaccaaggtgtttgcaaatgtaacatcagtagggtagagagaggaaaaagggggggaagaggtatttatgactgtcataaacctacccccaggccaacttCATGACACTCTCAATGGTTTATTTTCAGGGTCATGTCTTTTCTGATATGAAAGTGTACAAAAAGTGGAAAGGGAAGATACAtccagttggacaactgactaagTGCATTCAGTTAGGTGTGATGTCACTAATGCTCTCCTCACTGAATTAAACA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU816994 lncRNA downstream 226 50736259 ~ 50736862 (-) False G719069
TU816983 lncRNA downstream 2555 50734077 ~ 50734533 (-) True G719068
TU816969 lncRNA downstream 18483 50716159 ~ 50718605 (-) True LOC110530033
TU816971 lncRNA downstream 22154 50714582 ~ 50714934 (-) True G719056
TU816835 lncRNA downstream 23081 50688240 ~ 50714007 (-) True G718931
TU817048 lncRNA upstream 80466 50818782 ~ 50818987 (-) True G719114
TU817144 lncRNA upstream 217153 50955469 ~ 50957241 (-) True G719202
TU817152 lncRNA upstream 261078 50999394 ~ 51075009 (-) True G719208
TU817159 lncRNA upstream 317080 51055396 ~ 51067386 (-) True LOC110530040
TU817200 lncRNA upstream 343417 51081733 ~ 51082025 (-) True G719250
XR_002474474.2 mRNA downstream 7154 50716128 ~ 50729934 (-) False LOC110530033
XM_036985594.1 mRNA downstream 7158 50716128 ~ 50729930 (-) False LOC110530033
XM_036985591.1 mRNA downstream 7159 50716128 ~ 50729929 (-) False LOC110530033
XM_021612801.2 mRNA upstream 2660 50740976 ~ 50767911 (-) True LOC110530034
XM_021612802.2 mRNA upstream 52904 50791220 ~ 50793594 (-) True LOC110530035
XM_021612804.2 mRNA upstream 96224 50834540 ~ 50848805 (-) True LOC110530036
XM_021612807.2 mRNA upstream 294249 51032565 ~ 51038079 (-) False LOC110530040
XM_021612811.2 mRNA upstream 294249 51032565 ~ 51038079 (-) False LOC110530040
TU816422 other downstream 847836 49866630 ~ 49889252 (-) False LOC110530011
TU816366 other downstream 899392 49785674 ~ 49837696 (-) True G718489
TU814229 other downstream 1948126 48788521 ~ 48788962 (-) True G716488
TU814220 other downstream 1954573 48782121 ~ 48782515 (-) True G716480
TU814203 other downstream 1975925 48759912 ~ 48761163 (-) True G716463
TU817090 other upstream 198612 50936928 ~ 50939471 (-) True G719151
TU817704 other upstream 514039 51252355 ~ 51259019 (-) True LOC110530043
TU819491 other upstream 2022723 52761039 ~ 52761451 (-) True G721275
TU820029 other upstream 2724866 53463182 ~ 53463764 (-) False LOC110529122
TU820769 other upstream 2759832 53498148 ~ 53499730 (-) True G722459

Expression Profile


TU816988 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 5.
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TU816988 Expression in each Bioproject

Bar chart with 19 bars.
TU816988 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.