RNA id: TU816152



Basic Information


Item Value
RNA id TU816152
length 960
lncRNA type antisense_over
GC content 0.47
exon number 2
gene id G718279
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 50847528 ~ 50848799 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gagagagaagagaaagcaaAGATAGATGTGCAGAGAGAGATCACCTGTAGATCTTGTATCTGGTGGTGTAGCCTTGCTGGTGTCTCTCCACAGACTCCGTGAACTCCAGGGAATTGTGGAAGGGCCCTTTGTCCGACAGCAGCCAGCCCATGGGCCCAGCACCACCGCCATCACTGGGTCCGGCCGCGGCGGCAGCAACCCCAGCCCAAGTCCAGCAGCAGAACAGGCCCAGAGCGACCCCCTCCCATAAGAGCAGCACAGGCACCTGTCTAAGACCGATACCCTGGCAGCTCATGCTTCACCCAGCGACTCCTCATCCTCTCCGGACTTTGCCCTTGTCCTGGGGGGACAACCTGATTTTTGAAAGTGTGGAGACCaattatgtttatttttaatgaaTCAAAGAGATCTCGAGGTTGCACGAGCCCTGATAAAAGATATTTTCATTTTCCGTGTGgtcaaaatatgaaataaattcGCTCAACTGCCCGTGTAAGAATTGATGCGAGGCTGAATTACCAATCAAGGGGGAAAAACGTTTATTTTTCCTGCCTTCTGAAAATAAACCACTTTATATTCCAGAGCACATACATCCAAATATTGGAAGGCTCCTCCGTAGATTGCAGACTCCTCTGTAGATTGCAGGTGGATCTCACATTTGCCTTGCGCAACAACTTAAGCCTCAAAACAGAAGGGGAAGAACTCTGGGCGTCCGCCTCAAACAAGTGAGTAAAAAAATTGCGGTCAAAAACAATAATTCACAATCAGTGAATTGAATACGCGTTCTTTCAACTTCCTTATTTTTAATTTAACACTTACTAATTTAATTTGTAACCCCTAAAATTCCTACATCGGGTGCACAAATAGCCTGATCATTCGTTATCGGGGTTCAATTCCTAAGCTCAGGCAGTTGCTGCCTCCCTCTTGCAGTATCAGTTGTGTGAATGATGGAGGGGGGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU816128 lncRNA upstream 28680 50818507 ~ 50818848 (+) True G718255
TU816087 lncRNA upstream 46522 50800796 ~ 50801006 (+) True G718218
TU816100 lncRNA upstream 65945 50781319 ~ 50781583 (+) True G718231
TU816069 lncRNA upstream 111928 50735382 ~ 50735600 (+) True G718200
TU816033 lncRNA upstream 154555 50691161 ~ 50692973 (+) True G718164
TU816232 lncRNA downstream 111394 50960193 ~ 50960416 (+) True G718357
TU816238 lncRNA downstream 116649 50965448 ~ 50965647 (+) True G718363
TU816244 lncRNA downstream 120884 50969683 ~ 50971478 (+) True G718368
TU815907 lncRNA downstream 128442 50977241 ~ 51075015 (+) True G718058
TU816271 lncRNA downstream 160914 51009713 ~ 51051623 (+) True G718395
XM_021612794.2 mRNA upstream 181904 50648854 ~ 50665624 (+) False mier1b
XM_021612805.2 mRNA downstream 84733 50933532 ~ 50939589 (+) True LOC110530037
XM_036986872.1 mRNA downstream 94326 50943125 ~ 50944659 (+) True LOC110530926
XM_021612806.2 mRNA downstream 106609 50955408 ~ 50957451 (+) True LOC110530038
XR_002474475.2 mRNA downstream 141249 50990048 ~ 50995826 (+) False LOC110530039
XR_002474476.2 mRNA downstream 141249 50990048 ~ 50995826 (+) False LOC110530039
TU815927 other upstream 206362 50636696 ~ 50641166 (+) True LOC110530024
TU815871 other upstream 453692 50385546 ~ 50393836 (+) True LOC110530019
TU815524 other upstream 993336 49853387 ~ 49854192 (+) True LOC118965615
TU814748 other upstream 1300443 49546212 ~ 49547085 (+) True G716993
TU814604 other upstream 1513756 49332841 ~ 49333772 (+) True G716862
TU819925 other downstream 2528433 53377232 ~ 53377705 (+) False G721689
TU820195 other downstream 2821597 53670396 ~ 53671859 (+) False mrpl34
TU820196 other downstream 2821597 53670396 ~ 53671859 (+) True mrpl34
TU820345 other downstream 3077418 53926217 ~ 53927959 (+) True rps28
TU820675 other downstream 3775375 54624174 ~ 54670114 (+) True LOC118965528

Expression Profile