RNA id: TU817225



Basic Information


Item Value
RNA id TU817225
length 252
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G719274
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 51119235 ~ 51119486 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tcctggagctggccgcccggccaaactgagcaatcgggggagaagggacttggagttcctctgtggagctccagagttcctctgtggatatgggagaaccttccagaaggacaaccatctttgcagcactccaccaatcagtcctttatggtagagtggccagacagaaaccactcctcagtaaaaggcaaatgacagaccgcttggattttgccaagaggcacctaaaggactctgagaaagaagattctc

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU817214 lncRNA downstream 12556 51106439 ~ 51106679 (-) True G719263
TU817213 lncRNA downstream 13374 51105647 ~ 51105861 (-) True G719262
TU817205 lncRNA downstream 23585 51095376 ~ 51095650 (-) True G719255
TU817203 lncRNA downstream 34512 51084514 ~ 51084723 (-) True G719253
TU817202 lncRNA downstream 34725 51084243 ~ 51084510 (-) True G719252
TU817227 lncRNA upstream 4858 51124344 ~ 51124577 (-) True G719276
TU817607 lncRNA upstream 8906 51128392 ~ 51128917 (-) False LOC110530042
TU817608 lncRNA upstream 16843 51136329 ~ 51141203 (-) True LOC110530042
TU817680 lncRNA upstream 104400 51223886 ~ 51224406 (-) True G719696
TU817681 lncRNA upstream 105043 51224529 ~ 51224765 (-) True G719697
XM_036985599.1 mRNA downstream 51434 51032565 ~ 51067801 (-) False LOC110530040
XR_005052895.1 mRNA downstream 51586 51066307 ~ 51067649 (-) False LOC110530040
XM_021612810.2 mRNA downstream 51615 51032565 ~ 51067620 (-) False LOC110530040
XM_021612808.2 mRNA downstream 51616 51032565 ~ 51067619 (-) False LOC110530040
XM_021612807.2 mRNA downstream 81156 51032565 ~ 51038079 (-) False LOC110530040
XM_021612813.2 mRNA upstream 8128 51127614 ~ 51189612 (-) False LOC110530042
XM_021612816.2 mRNA upstream 132869 51252355 ~ 51259056 (-) False LOC110530043
XM_021612817.2 mRNA upstream 132869 51252355 ~ 51259060 (-) False LOC110530043
XM_021612815.2 mRNA upstream 134679 51254165 ~ 51259061 (-) False LOC110530043
XM_036985600.1 mRNA upstream 196808 51316294 ~ 51323226 (-) False LOC110530045
TU817090 other downstream 179764 50936928 ~ 50939471 (-) True G719151
TU816422 other downstream 1229983 49866630 ~ 49889252 (-) False LOC110530011
TU816366 other downstream 1281539 49785674 ~ 49837696 (-) True G718489
TU814229 other downstream 2330273 48788521 ~ 48788962 (-) True G716488
TU814220 other downstream 2336720 48782121 ~ 48782515 (-) True G716480
TU817704 other upstream 132869 51252355 ~ 51259019 (-) True LOC110530043
TU819491 other upstream 1641553 52761039 ~ 52761451 (-) True G721275
TU820029 other upstream 2343696 53463182 ~ 53463764 (-) False LOC110529122
TU820769 other upstream 2378662 53498148 ~ 53499730 (-) True G722459
TU820950 other upstream 2683957 53803443 ~ 53856065 (-) True G722602

Expression Profile


TU817225 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
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TU817225 Expression in each Bioproject

Bar chart with 18 bars.
TU817225 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.