RNA id: TU819406



Basic Information


Item Value
RNA id TU819406
length 8218
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G721207
representative False

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 52448383 ~ 52459659 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tgtactgtgctaTCCAAACTTGTGATACATAAATGTCTATGATTCGTTCAGATCTGAACCAATTATAGATATCTATGTTTGGGCTAATCAAGGCCTGTCCGGATGTCTGTGGACGTTGAAATCAAGGCCAGTCCGGACCAAAAAAAGATGGAGGACCAAAACAGGAGGTCCAAAAGACGTCGCCTGATGTCAAATGCTTAGTGGGACAGCCTTGACGACAACAAGGTACTTTCTTCCCTACATTGATTGTCTAACCATCCCATTTGTTCTACAGGCGGTTTCAACTCCCATATCAAATGGAATGGTTTATAAACCTATTCATGTTAGTAGTTATGCATAGGCAATTAGCTAGAACTTTAACACTCCCCTTACACTCACCATGCCAGTGGAGGGCCCCAGGCCCCCAGTCATCTCCATATTGTGGTGCTTCATGATGTACTGCAGCATCTCTCTCCAGTTGTAGCCCTCAGGTATGGCAATGGTGGTGACGGAGGGCAGCCTAAGGTCCTGCATGAATAAAATATCACGGTGCCACATTTagacacacttctgtgaaattCAAGACCAAGGAATTGCACCAGCCTTGAAATTGGAGGATGTTAAAAAAGTGACACTGTTATTGTAGAACGTAAATTGTTTGTTTTACAATCTGTCTGAAATGGACCTCTATTCCACACTGCACTACTTCATATGAAAATAGCATCTGGAGAAAAGTAGTGCAccgaatagggaatagggtgtgattacAGTTGCGTGGCAAGTCTTTTACCTTGTTTTGGATGAATAGCTTGAGGCCCATGTCTTCCAGGCCCTTCCAGAGGTACCCTGCCACCTCCCTGTGGTGCCTCCAGGACTCCTCCAGACCCTACGGGAAGACAAAGACTAGGTACTGATGGGACAGGCCCAGTAAACCGGAAACGGGTCAAAAACGGCTAGTAAATACTTTTTTCTGATTTATTTCGAGAATTAGAAGCAACGTTCAAAGTAATCAGCTAATAGGACTGCATCATAATGAACATAAACATGGTTTATTCATTAAGGTTATTATTCCATCATGGAGAGCTCAGTGCACCTAACGGAGGGCTCAGTGAATCACATGTGCTTACCGTAAAAATGTTATTAATAGCCTGACGTTTATTTGCttaaatcactgaacacaacaggCACTTactagagacaggcttctatttgagccaggtaTCTATTTCCTTAATGCACACAGCTTTTGCTCATTTGCATAGTTAATTTTTTAATCCCAGCATTCACTTCcaacattttaatacatttcttaATTTCCTGCACTGCGTTATCATTCACACACTTTCACATTTTAACTCGGCaagaaaagaaacgtcccttttttcaggacccggtctttcaaagaattcgtaaaaatccatataactttacagatcttcattgtaaagggtttaaacactgtttcccgtgctttttcaatgaaccataaacaattaatgaacatgcacctgtgggatggtcgttaagacactaacagcaattaaggtcacagttatgaaaacttaggacactaaagatgcctttctactgactctggaaaaacaccaaaagaaagacgcccagggtccctgctcatctgcgtgaacgtgccttaggcatgctgcaaggaggcatgaggactgcagatgtggtcagggcaataaattgcaatgtccgtactgcgagacgcctaagacagcgctacagggagacaggacggacagctgatcgtcctcgcagtgacagaccacgtgtaacaacacctgcacaggatcggtacatccgaacatcacacctgcaggccaggtacagaatggcaacaacaactgcctgagttacaccaggaacgcacaatccctccctcagtgctcagactgtccgcaataggctgagagaggctggactgagggcttgtaggcctgttgaaaggcaggtcctcaccagacattaccggcaccaacgttgcctatgggcacaaacccaccatcgctggaccagacaggactggcaaaaagtgctcttcactgacgagtcacggttttgtctcaccgggtgtgatggtcggatttgcgtttatcttcgaaggaatgagcgttacaccgcggcctgtactctggagcgggatcgatttggaggtggagggtccgtcatggtctggggcggcgTGTCAcggcatcatcggactgaggCTGAACAACCACAACAGACCCAGGTGAATTGAAGCTCATAAACCCcatgttaatctgtctgtctgtactgcaGTGGTGGTCACACTGCAACTGTGTCCATTACTAAAGGAGAAGTTGAGCAGGGAGAAGATACCTTTTCTAAAGGAGAAAGGCATCTGCTTTTGTCGTCTCACCAAGGGGCACATGAGCAGAGACTGTAGTAGGCGTCTCATATGTGTGCAACTAAGTCCACCCTCGTGTGCTTCATATGGAGCTACAGAAAGGAGGACCGGGAATATTGAGTCGGTGAAGAGAGGTTTGTTCTATCCATCATACCGGTTCATGTGAAATCCAGCAAAGGAAACAAGGTATTGCGAACATATACATTCTTAGACACAGGTAGCTCGGCAACATTCTGCACCGACAAGCTGGCTCAGCAGCTGAATGTAACAGGAACAAGAAGGAACGCCCTGCTGCGTACCATGGGCCAGGAAAGGCCTGTCAAAGGTGAGTGGGCTTGACACCAACAAGTTCATGAAACTATCGGAAGTTTACACTCACAAAAACCTACCAGTGACAAAGGAAAACATTCCCAGACAAGATGAGCTGTCCAAGTGGCCATATCTGGGAGAGGTTAAGCTGTCACACACATGCTGACATTGGATTGCTAAATAGGAACAATGCATCACAAGTAATGCAGGTGATCCATAGTCAAGCAGCAGGCCCGTATGCTGTCGAGACCCTACTAGGATTGGGTGGTGACTGTCCACTTAGAGAATGCAGTGACCGACGTGACACACAGGTACCGGTCGCTGCCAATAGGGTCTCCTTGATCAACCTGCTGGACCCGACGAGCCACTGTGGCACTGATTTCAGTGAGAAGGTGGAGAAGTCTGAAAGGTCAGAGCACAGCACGTTTGCCAGCTGAGGTGGTGAAGCAGAGTGCATCAGCTAAAGCGAGGAATGATGTCATACCCCATGTCATACACCCGCACATTTTGGCCCTTTTCTAAACATGTTTAGATAATTGTTGTTGCCTCACGTTACATACAATAAGGGGCCGGTATGTAAGGGCCAAATAGCAGGTTTTGTTATTTGTATAAATTAGAATTATATTATTTGTTTATATGCCATTCTGATTGTTTGTCATATTGTTTGACTGATCTTAATCACGTGCAGGTGTCTATGCCTCTCTCTGCAGGCTGGAGATGGCTTAAATAGTCATGGGCGCAGAGGCCTGCTGGGAATAGCTGGCTGGAGCCCATACTGTCTTTTGACCGTGCTTCCTTTGCCTTTGTGATATTGTTTGATTGTTTGATCCAAGAATTCTTAAGTTATAGCTTAAATATAGTCTTTTGATTTACTTTTTGCAACATTTTGTAGCCAAGATATGAAATAAATGTAACTTTATTTTTTTACGGCAAACAACCTGTGGACATTCGATTTCTGGATTCATGGACTACACACGGCAGGAACAAATAGTCAGCTCATTCTCCACTGTGGCTATAAGAAAAATAAAATAGGGTTTTAAAATGGTTACAAATAGCCACTACACCTTCTCAGCAAGAATAGCAAGACTTTCCCTCAGGGAAAAGAACCCAGACACTGGTCCTGTGTGGTGGTATCTGAAATGGGGCAAAATGAAAgagtgttatttatttatttattattatttcaccTGGTTAGGATGGGAGATTTTCTCAAAACAAAGTACTGTTCATTGACAATACTGTAGACTTACAGTCTGGCTGGTTGACCATCATTTCCCCAATAGTTAGACAAGTGGGCCATGTCAAAGAGGTAGGACACTGGTTTTGTTTTCCTGTTGAACATCTTTTGGCtgtatggtggggggggggttcaagaGGGAGTGTGTAAAGTCCACATTTCTCAAAATTCAAGCATTCATTTGGTCTCCATTCAAAATcattccccctctttcttccctctctctctctcacacacacacaaaccctcacCATGCTCTTTCATTGAAGGAGATGGGTGCTGTACCAGGGGGTGCATTCAATGCCTTTTGAGAGCCAGTGTACAGGATGTCAATATCTACAAAGACAAGAAAACGATGACATCATACACCCCATACactaagacagacagactgaaaaTGAAATAGGTGTCTGAAGCTCTCTTACTCTGCTGGTCCATGAAAATAGGCGACGCCCCAAGAGACGCGACAGTATCTACAAGAAACAGGGTAttgtgtctgaggagagagaagagagaggaatgtagGCCTGGAATTCGAAGCCGCTGTCATCATTGTGTGAACTGAGAGAAATGCAGTGGAGATATCCTGCAGTATGTTTTGAGATGGAGCGGAGTCTCACTTGCGGCAGAGGTCTCCAATGCCATCGACAGGGTGGGCGAGGCCAGCAGAGGACTCTCCATGTGTGAGGAAGAACAGAACGGGCTTGTGTTTGGCCAGGGCCTATCGATAGGCAGGAGATAAGTAGTCAGATAAACAAAATACTTTTGGCACTAAATGCCCTCCATAGTTACCCAAGCCCTTGCCATGTTGACGATATGAATTTAATATATACGCTATATGACTGAAATCAGGGCAGGCTCTGACCTTTTGGGGGCCATACGTGAGATTTGGTTGGGGGGCCAACCCACCAAGTGGACacatttttttgtggccccctcTCTTGAAGGCGGAGAGACAATATacgaatagaatatgtttctgaatacttctacattcatgtggatgctactatgATTACGGATTGTCCTGAATTAATCATgagtaatgatgagtgagaaagttacagatgcacaaatatcataccccaaagacacctctcaccattacaataacagtgtttttttggggggggggggtatgatatttatgcctccgTAACTTTCTCAGTCATCATTTTTCAAGATTCATTTCAGTATTATccctaatcatggtagcatccacattaatgtagaagtattTAGAatcatattatattcttatttacaataacagtgactccaaaatgacacaatacattatttaccattaatttctattgggtacaaaattatctgaaacaaccaaaacaaacagcaattGCATCCAACATGTTTGTAGAGTTataagcttgatgtaatcattgcgtgttaggaatatgggacccaatactaaacttttgactactttaatacacacaaGTTTAATTTCTACAGTGGTGGAACTAttaccatcactcctgtgttccaatgacacgttgtgttagctaatccaagtttagcattttaaaaggctaatagatcattagaaaacacttttgcaattatgttagcacagctgaaaactgttgttctgattaaagaagcaaaaaaactggccttctttagagtaCTTGAGTATTTTgaccatcagcatttgtgggtcagattacaggctcaaaatggccagaaacaaagacctttcttctgaaactcgtcagtctattcttgttctgagaaatgaaggctattccatgcgagaaattgccaagaaactggagatctcgtacaacgctgtctACTACTCCCTTcccagaacagcgcaaactggctctaaccagaatagaaagatgagtgggtgcacaactgagcaagaggacaagtacatttagagtgtctagtttgagaaacagacgcctcacaagtacTCAACTGGCAGTTTAAtttaatagtacccgcaaaacaccagtctcaacgtcaacagtgaagaggcaactccgggatgctggctttctaggcagagttgcaaagaaaaagccatttctcagattggccaataaaaatgaaatattaaaatgggcaaaagaacacagacactggacagagaaagattgttaaaaaagtgttatggacagacgaatCCAAGtttgaaaagatgctggaggagtgattgacgccatctgtcaagcatggtggagacaATGGGATGGTCTGGGgatgctttggtggtggtaagtgggagatttgtacagggtaaaaggggtcttgaagaaggaaggctatcactcacattttgcaacgccatgccataccatGTGGAtggtgcttaattggagccaattgcctcctacaacaggacaatgacccaaagcacagctccaaactatgtaagaactatttagggaagaagcattCAGCTGGTTTTCTGTCTATAATTGAGTGGCCtgcacagtcaccagatctcaaccctattgatctgttgtgggagcagcttgaccgtaagaagtgcccatcaagccaatcgaacttgtgggaggtgcttcaggaagcatggggtgaaatctcttcagattacctcaacaaattgtcagctagaatgccaaaggtctgcaaggctgtaattgctgcaaattgaggattctttgacaaaagcaaagtttaaaggacacaattattatttcaattaaaaatcattatttataactttgtcaatgtcttgactatatttcctattcgttttgcaactcatttcatgtatgttttcatggaaaacaaggacatttctaagtgactccaaacttttgaacagtagtgtaagtatcaaatgtaaatgtatttgctaaaatatacttaattatcaaaagtaaaattataaattgtatcaaattccttatattaagctaaCAAGATGGCACTAATTTTTTTGTGGATAGCCAAGgccacgctccaacactcagacatacaacaaaaaagcatttgtgtttagtgagtctgccagatcagaggcagaagtgATGACCacttctcttgataagtgcacgaattggaccattttcctgtcctgctaagcattaagtacttttgggtatcaggggaaatgtatggagtaaaaagtacattgttttattttggagtaaaagtaaaagttttcaaaaaaatatatatattacagtacagatacccccccaaaaccactttagtagtactttaaagtgttttttcttaagtactttacaccacagaatttctaaatggttcatcCAATATTGAAGAAAATACCTAAAGCTGCCAGTCATTGTAACATTTCAAATTCAGTGCTGGAgtacaaagccccccccccccccccccccccctccccccactgtCCAAATATTTTTGTCACTGTCCAAATATTTTTGGGGCTCACTGTTTAACTAGAATTGGTCACAAGGTTGGTGACCTTGAAGTCGCCGATGAGCCTGTATTGAAACCTGTATTGAACAATTTCTATGTGAATGCTACTTTGGTAGGCCTAATGCATTAACAAACAATTACCTTTTCAATTTCTCCATTGCTGAAAACTCCACCCGGTGCTTTTACCATGATATGAACATTGGCACCTGGAATAAATCCAGATGAAAGTCTAATATCCGGACAAAACAGATGTATACAAGACCATAAACAATTTTCTCAAATTACATTAACTCGCAAACATTGGTCTTGTTTCGAGACCGCTGAACTCGTGAGTAAAACCGTGCGTAAAACATACCCATTCTCTCGGCGATTTCAGCCACTCGCTCTCCCCATATTCCATTGACAGCCACGAGCACGCTCTCCCCGGGTTCTACCGTGTTGAAGACGGCGCACTCCATGGCTGCGTGTCCCGAGCCGCTCATTGCTATCGTCATGTTGTTCTGTGTCTGAAAAGCGTACTGGATCCCCTTCTTGATGTCGTTCATGATCTACAAGCTCGTACATTTCTGGGTGCAAATGGCCGATAATTCCCCTACCACCTGCGGCTAAAACTCGGGGCGGCACGTTGGACGGTCCTGGTCCGAACAGGTAGCGGAAAGGAACTTCGAGCGGCCGGAGCATGCACTCCGGGGGCGGGATGGTCACCGAGGACATGGCACGGTCAAGGCGCGGCTGTAGAGGCGCGCTCATCGGGAGCAGTGATACCTCCACAGCCGCCTTTTGCGCCAGCAGCGCTCCCCTGCGAAACAAAGTCCGCTGCATCATCGTTAGCTCCTCGCTCCGGTGTTTACAACGACTGTGACTTGcactgacagacagagggactggAGTTGACT

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU819401 lncRNA downstream 39155 52408868 ~ 52409228 (-) True G721203
TU819266 lncRNA downstream 156038 52291980 ~ 52292345 (-) True G721149
TU819265 lncRNA downstream 156463 52291672 ~ 52291920 (-) True G721148
TU819227 lncRNA downstream 203091 52243208 ~ 52245292 (-) True G721110
TU818615 lncRNA downstream 241592 52206555 ~ 52206791 (-) True G720563
TU819437 lncRNA upstream 26664 52483522 ~ 52490403 (-) True G721235
TU819440 lncRNA upstream 27199 52484057 ~ 52591956 (-) True G721236
TU819441 lncRNA upstream 28751 52485609 ~ 52538339 (-) True G721237
TU819447 lncRNA upstream 46831 52503689 ~ 52600136 (-) True trnav-cac-22
TU819451 lncRNA upstream 71545 52528403 ~ 52589826 (-) True G721243
XM_036985618.1 mRNA downstream 11515 52379925 ~ 52436868 (-) False kif1ab
XM_036985620.1 mRNA downstream 11515 52379925 ~ 52436868 (-) False kif1ab
XM_036985621.1 mRNA downstream 11515 52379925 ~ 52436868 (-) False kif1ab
XM_036985622.1 mRNA downstream 11515 52379925 ~ 52436868 (-) False kif1ab
XM_036985623.1 mRNA downstream 11515 52379925 ~ 52436868 (-) False kif1ab
XM_021612881.2 mRNA upstream 8834 52465692 ~ 52475757 (-) True LOC110530083
trnav-cac-8 mRNA upstream 27115 52483973 ~ 52484045 (-) True trnav-cac-8
trnav-aac-10 mRNA upstream 27317 52484175 ~ 52484247 (-) True trnav-aac-10
trnav-cac-9 mRNA upstream 28623 52485481 ~ 52485553 (-) True trnav-cac-9
trnav-aac-11 mRNA upstream 28825 52485683 ~ 52485755 (-) True trnav-aac-11
TU817704 other downstream 1189364 51252355 ~ 51259019 (-) True LOC110530043
TU817090 other downstream 1508912 50936928 ~ 50939471 (-) True G719151
TU816422 other downstream 2559131 49866630 ~ 49889252 (-) False LOC110530011
TU816366 other downstream 2610687 49785674 ~ 49837696 (-) True G718489
TU814229 other downstream 3659421 48788521 ~ 48788962 (-) True G716488
TU819491 other upstream 304181 52761039 ~ 52761451 (-) True G721275
TU820029 other upstream 1006324 53463182 ~ 53463764 (-) False LOC110529122
TU820769 other upstream 1041290 53498148 ~ 53499730 (-) True G722459
TU820950 other upstream 1346585 53803443 ~ 53856065 (-) True G722602
TU821019 other upstream 1469370 53926228 ~ 53927959 (-) True G722670

Expression Profile


TU819406 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
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TU819406 Expression in each Bioproject

Bar chart with 20 bars.
TU819406 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
End of interactive chart.