Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00035738 |
| length | 709 |
| lncRNA type | retained_intron |
| GC content | 0.49 |
| exon number | 4 |
| gene id | XLOC_018131 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007131.7 |
| NCBI id | CM002904.2 |
| chromosome length | 55201332 |
| location | 28266327 ~ 28352352 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006338 | chromatin remodeling | biological_process |
| GO:0006351 | transcription, DNA-templated | biological_process |
| GO:0043618 | regulation of transcription from RNA polymerase II promoter in response to stress | biological_process |
| GO:0042766 | nucleosome mobilization | biological_process |
| GO:0043044 | ATP-dependent chromatin remodeling | biological_process |
| GO:0006281 | DNA repair | biological_process |
| GO:0031011 | Ino80 complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0042393 | histone binding | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0016787 | hydrolase activity | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0043138 | 3'-5' DNA helicase activity | molecular_function |
| GO:0016887 | ATPase activity | molecular_function |
| GO:0004386 | helicase activity | molecular_function |
| id | description |
|---|---|
| ko03036 | Chromosome and associated proteins |
| id | description |
|---|---|
| ZDB-GENE-041014-72 | Predicted to enable ATP hydrolysis activity and histone binding activity. Predicted to be involved in DNA repair; chromatin remodeling; and regulation of transcription from RNA polymerase II promoter in response to stress. Predicted to act upstream of or within cellular response to DNA damage stimulus; chromatin remodeling; and transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of Ino80 complex. Orthologous to human INO80 (INO80 complex ATPase subunit). |
| ensembl_id | ENSDART00000153113 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00036853 | lncRNA | downstream | 15539 | 28267530 ~ 28269241 (-) | False | XLOC_018131 |
| TCONS_00036852 | lncRNA | downstream | 51188 | 28233277 ~ 28233592 (-) | True | XLOC_018130 |
| TCONS_00036851 | lncRNA | downstream | 120628 | 28114764 ~ 28164152 (-) | True | XLOC_018129 |
| TCONS_00036850 | lncRNA | downstream | 120653 | 28114764 ~ 28164127 (-) | False | XLOC_018129 |
| TCONS_00036849 | lncRNA | downstream | 130284 | 28114764 ~ 28154496 (-) | False | XLOC_018129 |
| TCONS_00036477 | lncRNA | upstream | 343656 | 28638760 ~ 28641841 (-) | True | XLOC_018135 |
| TCONS_00035758 | lncRNA | upstream | 540265 | 28835369 ~ 28842490 (-) | True | XLOC_018139 |
| TCONS_00036854 | lncRNA | upstream | 565338 | 28860442 ~ 28863882 (-) | True | XLOC_018140 |
| TCONS_00036478 | lncRNA | upstream | 1131834 | 29426938 ~ 29429462 (-) | True | XLOC_018147 |
| TCONS_00035778 | lncRNA | upstream | 1178483 | 29473587 ~ 29474495 (-) | True | XLOC_018148 |
| TCONS_00035734 | mRNA | downstream | 419816 | 27822044 ~ 27864964 (-) | True | XLOC_018128 |
| TCONS_00035733 | mRNA | downstream | 427104 | 27822044 ~ 27857676 (-) | False | XLOC_018128 |
| TCONS_00035732 | mRNA | downstream | 550989 | 27732578 ~ 27733791 (-) | True | XLOC_018127 |
| TCONS_00035731 | mRNA | downstream | 572810 | 27707766 ~ 27711970 (-) | True | XLOC_018126 |
| TCONS_00035730 | mRNA | downstream | 894522 | 27384138 ~ 27390258 (-) | True | XLOC_018125 |
| TCONS_00035739 | mRNA | upstream | 59165 | 28354269 ~ 28361574 (-) | True | XLOC_018132 |
| TCONS_00035740 | mRNA | upstream | 104489 | 28399593 ~ 28404443 (-) | False | XLOC_018133 |
| TCONS_00035741 | mRNA | upstream | 106435 | 28401539 ~ 28404362 (-) | True | XLOC_018133 |
| TCONS_00035742 | mRNA | upstream | 123380 | 28418484 ~ 28434078 (-) | False | XLOC_018134 |
| TCONS_00035743 | mRNA | upstream | 127441 | 28422545 ~ 28433616 (-) | False | XLOC_018134 |
| TCONS_00035726 | other | downstream | 973165 | 27308416 ~ 27311615 (-) | True | XLOC_018122 |
| TCONS_00035722 | other | downstream | 1058902 | 27224812 ~ 27225878 (-) | True | XLOC_018121 |
| TCONS_00035715 | other | downstream | 1230560 | 27054095 ~ 27054220 (-) | True | XLOC_018118 |
| TCONS_00035701 | other | downstream | 1695870 | 26584112 ~ 26588910 (-) | True | XLOC_018111 |
| TCONS_00035698 | other | downstream | 1733547 | 26550661 ~ 26551233 (-) | True | XLOC_018110 |
| TCONS_00035747 | other | upstream | 316168 | 28611272 ~ 28612322 (-) | True | XLOC_018136 |
| TCONS_00035753 | other | upstream | 537658 | 28832762 ~ 28842571 (-) | False | XLOC_018139 |
| TCONS_00035760 | other | upstream | 576781 | 28871885 ~ 28875874 (-) | False | XLOC_018141 |
| TCONS_00035770 | other | upstream | 752079 | 29047183 ~ 29050045 (-) | True | XLOC_018144 |
| TCONS_00035788 | other | upstream | 1200196 | 29495300 ~ 29495435 (-) | True | XLOC_018151 |
