RNA id: TU819863



Basic Information


Item Value
RNA id TU819863
length 362
lncRNA type antisense_over
GC content 0.62
exon number 2
gene id G721631
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 53330465 ~ 53330996 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTGCACGCGGGCCTCGGGGAGGTTAGTGCACATGGCAAGGCGCTCGCGCATCACCACGTCGGGGTAGTGGGTCTTCTGGAAAGTCTTCTCCAAGGCCTCAAGCTGCTGCGCGGTGAACGCGGTGCGGCTTCGGCGCTGTTTGCGATGCTGGGACCCGTAGCGAGCCTCGAGGATGATGTCTTGAAATGTGCAGCCAGCAAGTCTCTCAGCTAGGGTGAGCGCGTGCACTGAAGGTCGGTAGTCTGGCGCGTGCTGCGCCTGTTGCGCGGCCTGCTGGTGCAGGTTGTACATGGCGCTCAGGGAGTTCATCGCGTGGAGAGAGTAGCCGTTCACTCCATAGTGCTGCATGATGTCCACTACCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU819831 lncRNA downstream 34137 53296109 ~ 53296328 (-) True G721599
TU819757 lncRNA downstream 141650 53188582 ~ 53188815 (-) True G721526
TU819756 lncRNA downstream 143458 53186667 ~ 53187007 (-) True G721525
TU819703 lncRNA downstream 146287 53183722 ~ 53184178 (-) True G721472
TU819747 lncRNA downstream 177103 53153123 ~ 53153362 (-) True G721516
TU819870 lncRNA upstream 9745 53340741 ~ 53340962 (-) True G721638
TU819918 lncRNA upstream 45034 53376030 ~ 53376247 (-) True G721685
TU819940 lncRNA upstream 56479 53387475 ~ 53387680 (-) True G721704
TU819983 lncRNA upstream 99707 53430703 ~ 53430952 (-) True G721747
TU820002 lncRNA upstream 112796 53443792 ~ 53444085 (-) True G721766
XM_036985654.1 mRNA downstream 71950 53255197 ~ 53258515 (-) True LOC110530106
XM_021612923.2 mRNA downstream 72635 53255197 ~ 53257830 (-) False LOC110530106
XM_036985655.1 mRNA downstream 72876 53255197 ~ 53257589 (-) False LOC110530106
XM_021612915.2 mRNA downstream 262679 53059646 ~ 53067786 (-) True dipk1aa
XM_021611261.2 mRNA downstream 308319 53019506 ~ 53022146 (-) True LOC110529119
XM_036985657.1 mRNA upstream 11607 53342603 ~ 53360245 (-) True nsun4
XM_021611263.2 mRNA upstream 131038 53462034 ~ 53478913 (-) False LOC110529122
XM_036985658.1 mRNA upstream 131038 53462034 ~ 53478913 (-) False LOC110529122
XM_021612937.2 mRNA upstream 169460 53500456 ~ 53569137 (-) False LOC110530111
XM_021612934.2 mRNA upstream 169460 53500456 ~ 53569139 (-) False LOC110530111
TU819491 other downstream 569014 52761039 ~ 52761451 (-) True G721275
TU817704 other downstream 2071446 51252355 ~ 51259019 (-) True LOC110530043
TU817090 other downstream 2390994 50936928 ~ 50939471 (-) True G719151
TU816422 other downstream 3441213 49866630 ~ 49889252 (-) False LOC110530011
TU816366 other downstream 3492769 49785674 ~ 49837696 (-) True G718489
TU820029 other upstream 132186 53463182 ~ 53463764 (-) False LOC110529122
TU820769 other upstream 167152 53498148 ~ 53499730 (-) True G722459
TU820950 other upstream 472447 53803443 ~ 53856065 (-) True G722602
TU821019 other upstream 595232 53926228 ~ 53927959 (-) True G722670
TU821119 other upstream 793383 54124379 ~ 54139341 (-) True G722761

Expression Profile


TU819863 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: -0.5 to 0.5.
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TU819863 Expression in each Bioproject

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TU819863 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1.
End of interactive chart.