RNA id: TU820083


Basic Information

Item Value
RNA id TU820083
length 427
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G721846
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 53495805 ~ 53496231 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACCTTACCAAGCGACCAAAGGGTCAATGTATTTATTAACAAGTCGCAGATAGGACAAagtctatatatatacacacacagacgtatatacaatgccttcagaaagtatccacaATGCTTCACTCTTACCAAttattgttacagcctgaatttaaaattgattcaattgaggttgtgtcactgatctacacacaatagggcaccacagtggaggtgtcataatacccataaaaccaaGCTGTCAAAACAGGTTCCAATACTGTTTCCATCATTCACTTTTGAAATGTGTAAGCTTACCCTGGCAtaacgttttgataaccatgtaaatctctcggACGAGGTGACATTCATCAATACATCCGGCTCTACTTACTCTCAGATTCAAAAATGCCAATTAGCATAAAAGTAGACATCACGCAAAACTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU820080 lncRNA upstream 661 53494782 ~ 53495144 (+) True G721843
TU820070 lncRNA upstream 8569 53486984 ~ 53487236 (+) True G721833
TU820027 lncRNA upstream 33143 53462423 ~ 53462662 (+) True G721790
TU819987 lncRNA upstream 60932 53434644 ~ 53434873 (+) True G721751
TU819986 lncRNA upstream 61375 53434204 ~ 53434430 (+) True G721750
TU820082 lncRNA downstream 93 53496324 ~ 53497920 (+) True G721845
TU820081 lncRNA downstream 3229 53499460 ~ 53499760 (+) True G721844
TU820151 lncRNA downstream 120743 53616974 ~ 53617219 (+) True G721913
TU820168 lncRNA downstream 134675 53630906 ~ 53631386 (+) True G721928
TU820194 lncRNA downstream 178276 53674507 ~ 53679992 (+) True LOC110530115
XM_021612926.2 mRNA upstream 40772 53452148 ~ 53455033 (+) True LOC110530110
XM_021612924.2 mRNA upstream 159752 53325588 ~ 53336053 (+) False LOC110530108
XM_036985656.1 mRNA upstream 159752 53325588 ~ 53336053 (+) True LOC110530108
XR_005052900.1 mRNA upstream 215463 53258440 ~ 53280342 (+) True LOC118965525
XM_036984524.1 mRNA upstream 246246 53245846 ~ 53249559 (+) False gng12a
XM_036985666.1 mRNA downstream 174117 53670348 ~ 53674103 (+) False mrpl34
XM_036985667.1 mRNA downstream 174124 53670355 ~ 53674103 (+) False mrpl34
XM_036985668.1 mRNA downstream 174202 53670433 ~ 53674103 (+) False mrpl34
XM_036985665.1 mRNA downstream 174367 53670598 ~ 53674103 (+) False mrpl34
XM_021612943.2 mRNA downstream 178249 53674480 ~ 53680005 (+) False LOC110530115
TU819925 other upstream 118100 53377232 ~ 53377705 (+) False G721689
TU815927 other upstream 2854639 50636696 ~ 50641166 (+) True LOC110530024
TU815871 other upstream 3101969 50385546 ~ 50393836 (+) True LOC110530019
TU815524 other upstream 3641613 49853387 ~ 49854192 (+) True LOC118965615
TU814748 other upstream 3948720 49546212 ~ 49547085 (+) True G716993
TU820195 other downstream 174165 53670396 ~ 53671859 (+) False mrpl34
TU820196 other downstream 174165 53670396 ~ 53671859 (+) True mrpl34
TU820345 other downstream 429986 53926217 ~ 53927959 (+) True rps28
TU820675 other downstream 1127943 54624174 ~ 54670114 (+) True LOC118965528
TU821992 other downstream 1637799 55134030 ~ 55136631 (+) True LOC110530153

Expression Profile