RNA id: TU821019



Basic Information


Item Value
RNA id TU821019
length 350
RNA type TUCP
GC content 0.52
exon number 4
gene id G722670
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 53926228 ~ 53927959 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTCACCTTgaacaacacatttttatttttttcttaaacTGCACAAGTGAGATGTGGGGCCATTGCAGATGAACTGATGGGGTGTCTGCACCCCAGGCGTTGGTTTGGCATCTCAACTTCGCCGGGCACTTTATCGCAGCCTTCTGGCTTCCCTTTCAGACTCCAGAAGTGTCAGCACATCACCCTCTCTGACTGGCCCCTTCACATTCCTGATGATCGACCGGTTGCTGTCATCCATGAACTCCACACGGACCTGGGTACACTGTCCCTGGGAACCAGTTCTCCCGAGCACCTTGGTGACTCTTGCAAGCTTGATCGGCTGCACGCGGCTGGCATCCATATTGTCAGGTT

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU821007 lncRNA downstream 20766 53905148 ~ 53905462 (-) True G722659
TU820960 lncRNA downstream 97169 53828679 ~ 53829059 (-) True G722612
TU820885 lncRNA downstream 97747 53825024 ~ 53828481 (-) True LOC110530934
TU820815 lncRNA downstream 216861 53635849 ~ 53709367 (-) True LOC110530114
TU820840 lncRNA downstream 246233 53677925 ~ 53679995 (-) True G722523
TU821035 lncRNA upstream 16635 53944594 ~ 53944946 (-) True G722686
TU821043 lncRNA upstream 24236 53952195 ~ 53952400 (-) True G722694
TU821045 lncRNA upstream 26238 53954197 ~ 53954429 (-) True G722696
TU821055 lncRNA upstream 37217 53965176 ~ 53965407 (-) True G722699
TU821086 lncRNA upstream 105332 54033291 ~ 54034722 (-) True G722728
XM_021614230.2 mRNA downstream 8611 53914820 ~ 53917617 (-) True insl3
XM_036985677.1 mRNA downstream 45443 53825024 ~ 53880785 (-) False LOC110530934
XM_036985676.1 mRNA downstream 45445 53825024 ~ 53880783 (-) False LOC110530934
XM_036985672.1 mRNA downstream 45447 53818706 ~ 53880781 (-) False LOC110530934
XM_036985674.1 mRNA downstream 45449 53818706 ~ 53880779 (-) False LOC110530934
XM_036985678.1 mRNA upstream 38038 53965997 ~ 53995304 (-) False LOC110530121
XM_036985679.1 mRNA upstream 38038 53965997 ~ 53995304 (-) False LOC110530121
XM_036985680.1 mRNA upstream 53450 53981409 ~ 53995304 (-) True LOC110530121
XM_021612952.2 mRNA upstream 73170 54001129 ~ 54003188 (-) True LOC110530123
XR_005053060.1 mRNA upstream 74475 54002434 ~ 54002567 (-) True LOC118965682
TU820950 other downstream 70163 53803443 ~ 53856065 (-) True G722602
TU820769 other downstream 426498 53498148 ~ 53499730 (-) True G722459
TU820029 other downstream 462464 53463182 ~ 53463764 (-) False LOC110529122
TU819491 other downstream 1164777 52761039 ~ 52761451 (-) True G721275
TU817704 other downstream 2667209 51252355 ~ 51259019 (-) True LOC110530043
TU821119 other upstream 196420 54124379 ~ 54139341 (-) True G722761
TU821220 other upstream 323155 54251114 ~ 54251546 (-) True G722854
TU821231 other upstream 353726 54281685 ~ 54281978 (-) True G722864
TU822417 other upstream 1449322 55377281 ~ 55377776 (-) True G723955
TU822429 other upstream 1468665 55396624 ~ 55396885 (-) True G723966

Expression Profile


TU821019 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1500.
End of interactive chart.

TU821019 Expression in each Bioproject

Bar chart with 20 bars.
TU821019 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60000.
End of interactive chart.