RNA id: TU821086



Basic Information


Item Value
RNA id TU821086
length 1432
lncRNA type intronic
GC content 0.37
exon number 1
gene id G722728
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 54033291 ~ 54034722 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gaaaagtatattatacagtgtgcaaatgtagtaatattggggaggtaaggcaataaataggccatagtggcgaaataattacaatttagcattaacctttctgatctccccatcccggatccgggatcgtgaatacagactcaagctcattaccataacgcaacgttaactattcatgaaaatcgcaaatgaaatgaaataaatatgctagctctcaagcttagccttttgttaacaacactgtcatctcagattttcaaaatatgcttctcaaccattgcaaaacaagcatttgtgtaacagtattgatggctaacgtagcatttagcattagcattcagctggcaacatttacacaaaaaaacagaaaagcattcaaataaaatcatttacctttgaagaacttcagatgttttcaatgaggagactctcagatagcaaatgttcagtttttcctgaaagattatttgtttaggacaaatcgctccgttttctgcgtcacgtttagctatgaaaaaaaccctgtatccaggattgtttAAATcttatcagcaagctcattagcataacacaacgttaactatttatgaaaatcgcaaatgaaatgaaataaatatgccatctctcaagcttagccttttgtaaacaacactgtcatctcagattttcaaaatatgcttctcaaccataggaaaacaatcatttgtgtaaaagtagctagctagcgttagcatttcgcgttagcatttagcgttagcattagcgttagcatccagcacgcaacattaacaaaaacataaaagccttcaaataaaatcatttacctttgaagaacttctgatgttttcaatgaggatactctcagttagatagcagatgctcagtttttccaaaaagattccttgtgtattagaaatagctctgttttatacatcacatttggctaccaaaaaaaatccgaaaattcagtcctcaaaacgcgaacttttttccaaattaactccataatatcgactgaaaacatggcaaacgttgtttagaatcaatcatcaaggtgtttttcacatatctcttcattgatacatcgttcttggacacatgctttctcccctgaatcaaatggtaaagtagaagcagctggcaattgcgcaccgaattcgacgcaggacaccaggcggacacttggaaaatgtagtctcttatggtcaatcttccaatgatatgcctacaaatacgtcacaatgctgctaagaccttgggcgaacgacagaaagtgtaggctcattcgttgcgcaatcacagccatataaggagagaatggaaaacagagcttcagaaattctgctaattcctgggtgatgcatcatcttggtttcgcctgtagaatgagttctggggcacttacagacaaaatctttgcagattcttaaac

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU821055 lncRNA downstream 67884 53965176 ~ 53965407 (-) True G722699
TU821045 lncRNA downstream 78862 53954197 ~ 53954429 (-) True G722696
TU821043 lncRNA downstream 80891 53952195 ~ 53952400 (-) True G722694
TU821035 lncRNA downstream 88345 53944594 ~ 53944946 (-) True G722686
TU821007 lncRNA downstream 127829 53905148 ~ 53905462 (-) True G722659
TU821166 lncRNA upstream 145720 54180442 ~ 54185532 (-) True G722805
TU821173 lncRNA upstream 153347 54188069 ~ 54189214 (-) True G722812
TU821176 lncRNA upstream 154670 54189392 ~ 54243058 (-) True G722814
TU821132 lncRNA upstream 169966 54204688 ~ 54207815 (-) True G722773
TU821215 lncRNA upstream 212350 54247072 ~ 54247859 (-) True G722849
XM_036985681.1 mRNA downstream 18857 54008434 ~ 54014434 (-) True cnn2
XM_021612952.2 mRNA downstream 30103 54001129 ~ 54003188 (-) True LOC110530123
XR_005053060.1 mRNA downstream 30724 54002434 ~ 54002567 (-) True LOC118965682
XM_036985678.1 mRNA downstream 37987 53965997 ~ 53995304 (-) False LOC110530121
XM_036985679.1 mRNA downstream 37987 53965997 ~ 53995304 (-) False LOC110530121
XM_021612959.2 mRNA upstream 23400 54058122 ~ 54105410 (-) True LOC110530125
XM_021612960.2 mRNA upstream 92346 54127068 ~ 54131739 (-) True LOC110530126
XM_021612975.2 mRNA upstream 339511 54374233 ~ 54377574 (-) True LOC110530134
XM_021612981.2 mRNA upstream 408408 54443130 ~ 54445222 (-) True LOC110530139
XM_021612982.2 mRNA upstream 411497 54446219 ~ 54465716 (-) True LOC110530140
TU821019 other downstream 105332 53926228 ~ 53927959 (-) True G722670
TU820950 other downstream 177226 53803443 ~ 53856065 (-) True G722602
TU820769 other downstream 533561 53498148 ~ 53499730 (-) True G722459
TU820029 other downstream 569527 53463182 ~ 53463764 (-) False LOC110529122
TU819491 other downstream 1271840 52761039 ~ 52761451 (-) True G721275
TU821119 other upstream 89657 54124379 ~ 54139341 (-) True G722761
TU821220 other upstream 216392 54251114 ~ 54251546 (-) True G722854
TU821231 other upstream 246963 54281685 ~ 54281978 (-) True G722864
TU822417 other upstream 1342559 55377281 ~ 55377776 (-) True G723955
TU822429 other upstream 1361902 55396624 ~ 55396885 (-) True G723966

Expression Profile


TU821086 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 20.
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TU821086 Expression in each Bioproject

Bar chart with 20 bars.
TU821086 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
End of interactive chart.