RNA id: TU821219



Basic Information


Item Value
RNA id TU821219
length 698
lncRNA type antisense_over
GC content 0.42
exon number 1
gene id G722853
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 54252145 ~ 54252842 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTGGTATTTGGAGACGGGGTAGAGGAGCCGGGTGTCTAGCTTAGCGTTGTACTGGGCCAGGGAATCGTGACGGTAGTGGTTGATGAGCTCCACCACCGTGGTGAAGGTGAGCGGCTCGGAGAAGCCATAGCGACCGTCCCGGTGGCAGATCTTTATCAGCTTGTTGTTgcctcctttcctgtggtggaGAAACGGTGAGACATCAATGTCAATGGCGAGAAATACATTTGAAATCTCAGTGATTGCTTTTTTGAATCTAAATGTTGCTTTCATTTAGATTCATTCTGTAGATCCTTTTGAACCATTTGCTCTTTTTCCAAACGTGAACCCAAGACCCAAGTATCACAATAGCAAACTTACATTCCACATTCTAAAAGGAGATCAAAAATCACTCATTTACAGACGTTTGGTAAATGTGTAATGTTGACCGTCCTCCACTCTTTACataagacatacagtgccttgcgaaagtattcggccccattgaactttgcgaccttttgccacatttcaggcttcaaacataaatatataaaactgtatttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaaactttaacaaatcaaaaactgaaaaattgggcgtgcaaaattattcagcccctttactttcagtgcagcaaactctctccagaag

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU821215 lncRNA downstream 4286 54247072 ~ 54247859 (-) True G722849
TU821176 lncRNA downstream 9087 54189392 ~ 54243058 (-) True G722814
TU821132 lncRNA downstream 44330 54204688 ~ 54207815 (-) True G722773
TU821173 lncRNA downstream 62931 54188069 ~ 54189214 (-) True G722812
TU821166 lncRNA downstream 66613 54180442 ~ 54185532 (-) True G722805
TU821218 lncRNA upstream 1320 54254162 ~ 54254404 (-) True G722852
TU821227 lncRNA upstream 10897 54263739 ~ 54263859 (-) True G722860
TU821230 lncRNA upstream 19934 54272776 ~ 54273055 (-) True G722863
TU821229 lncRNA upstream 23927 54276769 ~ 54277039 (-) True G722862
TU821281 lncRNA upstream 77923 54330765 ~ 54331775 (-) True G722906
XM_021612960.2 mRNA downstream 120406 54127068 ~ 54131739 (-) True LOC110530126
XM_021612959.2 mRNA downstream 146735 54058122 ~ 54105410 (-) True LOC110530125
XM_021612953.2 mRNA downstream 212573 54024736 ~ 54039572 (-) True crsp7
XM_021612954.2 mRNA downstream 212574 54024736 ~ 54039571 (-) False crsp7
XM_036985681.1 mRNA downstream 237711 54008434 ~ 54014434 (-) True cnn2
XM_021612975.2 mRNA upstream 121391 54374233 ~ 54377574 (-) True LOC110530134
XM_021612981.2 mRNA upstream 190288 54443130 ~ 54445222 (-) True LOC110530139
XM_021612982.2 mRNA upstream 193377 54446219 ~ 54465716 (-) True LOC110530140
XM_036985695.1 mRNA upstream 225083 54477925 ~ 54485433 (-) False LOC110530141
XM_021612983.2 mRNA upstream 225083 54477925 ~ 54485771 (-) False LOC110530141
TU821220 other downstream 599 54251114 ~ 54251546 (-) True G722854
TU821119 other downstream 112804 54124379 ~ 54139341 (-) True G722761
TU821019 other downstream 324186 53926228 ~ 53927959 (-) True G722670
TU820950 other downstream 396080 53803443 ~ 53856065 (-) True G722602
TU820769 other downstream 752415 53498148 ~ 53499730 (-) True G722459
TU821231 other upstream 28843 54281685 ~ 54281978 (-) True G722864
TU822417 other upstream 1124439 55377281 ~ 55377776 (-) True G723955
TU822429 other upstream 1143782 55396624 ~ 55396885 (-) True G723966
TU822777 other upstream 1382696 55635538 ~ 55646014 (-) True G724287
TU822909 other upstream 1532675 55785517 ~ 55791485 (-) True G724400

Expression Profile


TU821219 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
End of interactive chart.

TU821219 Expression in each Bioproject

Bar chart with 19 bars.
TU821219 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
End of interactive chart.