RNA id: TU822028


Basic Information

Item Value
RNA id TU822028
length 215
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G723601
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 55181116 ~ 55181330 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGGGAAAGGGTTAGTGACCACTGAACACTAGCCTTAAACAGTACCACAAGTAATGTTGTCTTGTAGCCCTCTGGTGGCTGAAACACATTTCCTTTTGTCCCTTATTGAGGTGAAATACAAATTGTCCTTCTGAACTGCTTTTCGACTGTAACGCCGGTGTTTCACTCGTGTATACATCCATATaatactagggaaattgtgtttcCATATCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU821987 lncRNA upstream 72159 55108611 ~ 55108957 (+) True G723563
TU821962 lncRNA upstream 79586 55085971 ~ 55101530 (+) True G723539
TU821959 lncRNA upstream 91422 55085971 ~ 55089694 (+) False G723539
TU821966 lncRNA upstream 106946 55073829 ~ 55074170 (+) True G723543
TU821938 lncRNA upstream 150592 55030154 ~ 55030524 (+) True G723525
TU822037 lncRNA downstream 4958 55186288 ~ 55186501 (+) True G723606
TU822027 lncRNA downstream 5590 55186920 ~ 55187014 (+) True otol1a
TU822033 lncRNA downstream 21535 55202865 ~ 55203789 (+) True G723604
TU822102 lncRNA downstream 132602 55313932 ~ 55332467 (+) True G723662
TU822086 lncRNA downstream 154286 55335616 ~ 55337587 (+) False G723650
XM_036985709.1 mRNA upstream 44478 55120291 ~ 55136638 (+) False LOC110530153
XM_036985710.1 mRNA upstream 44478 55120292 ~ 55136638 (+) False LOC110530153
XM_036985711.1 mRNA upstream 44478 55120292 ~ 55136638 (+) False LOC110530153
XR_005052907.1 mRNA upstream 75083 55102444 ~ 55106033 (+) False LOC110530151
XR_005052910.1 mRNA upstream 75094 55102457 ~ 55106022 (+) False LOC110530151
XM_036985713.1 mRNA downstream 3097 55184427 ~ 55190256 (+) False otol1a
XM_021613008.2 mRNA downstream 42228 55223558 ~ 55261073 (+) True LOC110530158
XM_036985717.1 mRNA downstream 88927 55270257 ~ 55293244 (+) False lrrcc1
XM_021613009.2 mRNA downstream 89253 55270583 ~ 55293244 (+) False lrrcc1
XM_036985716.1 mRNA downstream 89253 55270583 ~ 55293244 (+) True lrrcc1
TU821992 other upstream 44485 55134030 ~ 55136631 (+) True LOC110530153
TU820675 other upstream 511002 54624174 ~ 54670114 (+) True LOC118965528
TU820345 other upstream 1253157 53926217 ~ 53927959 (+) True rps28
TU820195 other upstream 1509257 53670396 ~ 53671859 (+) False mrpl34
TU820196 other upstream 1509257 53670396 ~ 53671859 (+) True mrpl34
TU822189 other downstream 278366 55459696 ~ 55460120 (+) True LOC110530939
TU822550 other downstream 528910 55710240 ~ 55718237 (+) False si:ch211-267e7.3
TU824284 other downstream 1802240 56983570 ~ 56984285 (+) True G725573
TU824563 other downstream 2287542 57468872 ~ 57477729 (+) True LOC110530213
TU824624 other downstream 2332276 57513606 ~ 57515394 (+) False G725878

Expression Profile