RNA id: TU822612


Basic Information

Item Value
RNA id TU822612
length 214
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G724133
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 55617066 ~ 55617279 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGACAGCACAGGCGTGTAGAACATCATCAATCTCATACATCATCAATCTCCGGGCACAAAAGATGAAACGTGCAACCCAACTTTCCATTGTGAGCCCTTTCTTTGGCATCAGCTAAGTTTCCATGCGTCCAGTCGAGTTAAATAGacacaaacaaaaaacaaccCATGTCAGTGACATTTTCAGGATAGGAGGGTGTATCATGAGATCTATAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU822575 lncRNA upstream 2177 55587567 ~ 55614889 (+) True G724096
TU822567 lncRNA upstream 60773 55554664 ~ 55556293 (+) True LOC110530940
TU822528 lncRNA upstream 96767 55519976 ~ 55520299 (+) True G724057
TU822527 lncRNA upstream 97103 55519759 ~ 55519963 (+) True G724056
TU822525 lncRNA upstream 97776 55519071 ~ 55519290 (+) True G724054
TU822619 lncRNA downstream 8352 55625631 ~ 55625854 (+) True G724140
TU822631 lncRNA downstream 45311 55662590 ~ 55666363 (+) True G724152
TU822633 lncRNA downstream 50938 55668217 ~ 55668558 (+) True G724154
TU822546 lncRNA downstream 106210 55723489 ~ 55724256 (+) True si:ch211-267e7.3
TU822673 lncRNA downstream 121163 55738442 ~ 55739151 (+) True G724191
XM_036986876.1 mRNA upstream 62272 55549889 ~ 55554794 (+) False LOC110530940
XR_005052913.1 mRNA upstream 66780 55548019 ~ 55550286 (+) False LOC118965530
XR_005052914.1 mRNA upstream 66780 55548019 ~ 55550286 (+) True LOC118965530
XM_036985722.1 mRNA upstream 66926 55548019 ~ 55550140 (+) False LOC118965530
XM_021613028.2 mRNA upstream 83536 55529125 ~ 55533530 (+) True LOC110530169
XM_036986878.1 mRNA downstream 8692 55625971 ~ 55630214 (+) True LOC110530941
XM_036985730.1 mRNA downstream 14645 55631924 ~ 55682922 (+) False LOC110530172
XM_036985728.1 mRNA downstream 14646 55631925 ~ 55682922 (+) False LOC110530172
XM_036985729.1 mRNA downstream 14647 55631926 ~ 55682922 (+) False LOC110530172
XM_036985727.1 mRNA downstream 14650 55631929 ~ 55682922 (+) False LOC110530172
TU822189 other upstream 156946 55459696 ~ 55460120 (+) True LOC110530939
TU821992 other upstream 480435 55134030 ~ 55136631 (+) True LOC110530153
TU820675 other upstream 946952 54624174 ~ 54670114 (+) True LOC118965528
TU820345 other upstream 1689107 53926217 ~ 53927959 (+) True rps28
TU820196 other upstream 1945207 53670396 ~ 53671859 (+) True mrpl34
TU822550 other downstream 92961 55710240 ~ 55718237 (+) False si:ch211-267e7.3
TU824284 other downstream 1366291 56983570 ~ 56984285 (+) True G725573
TU824563 other downstream 1851593 57468872 ~ 57477729 (+) True LOC110530213
TU824624 other downstream 1896327 57513606 ~ 57515394 (+) False G725878
TU824625 other downstream 1896327 57513606 ~ 57515394 (+) True G725878

Expression Profile