RNA id: TU822909



Basic Information


Item Value
RNA id TU822909
length 969
RNA type TUCP
GC content 0.43
exon number 3
gene id G724400
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 55785517 ~ 55791485 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GAAAGAAGAGCGAACGCACGATGGCGTTAAGCTATAGCAGTCATCTATTCAaacccataaccattcaatcttcGTGAAGAGAAGTGAACGCCTTCTGCATCAAACTCGTCCTATATCATTCAAGGATGTCATTAGAATATTGAAGAGAAGGAAATCAAAAAGgatgtcggtgggtggagccgggagggtcgtcagtgaaatgggacacacctgggcccgggtgtgtcccaggataaatacacctcttccccattcattgaggGTAACAGCTTCACCACAGCAGATGAATCGGCTACAGATAGTCCAAAACATGACAATAAAAATGGCTTACAGACTACTAAGATACATCAGCAATCACTACGTTAACAGCATATCTGGGCTGACATCAATCAACAATAGAGAGTCAATCATTGGCCAGAAGTTCATCAACAGAGCCACTCACAACCCATCACTGAAAGGGAGCCGTGGGACAGACCAAATGGACCACAGATACACATGTCCATAATGCTAAAACTGACCTagaagggaggaaaggggagaaaggaaaaagtaaacttttttatttttttaaatgcaatcAATTGTGTGTATATGAAAGTGTGTAGATATATGTGAATGCACTCCTTagctcccccacccctctcctcctgcacAGTTGTGAGCTATAATTTtaatgatgtttttttttttttttattattattatttaaaaacaataaatattttttaaagtaaacacCACAAACTCATGTCGGGAAAAGAAAAAGGTGAAACTAATCTACGCCCGTTCTGATAAAAACCTTAGGGCATCTAGCCTCGGGGGATGCCTTGCTTGACCACACCCTCCTTCCTTGCTCCTGGCCTGCCCTGCCTCTTCCACCAATCCATTTGTTTCTTATggacagaaaagagcagaagctctgagctGTCTGATCAGGTCCGTTGTTTACTGAGCATTGAGGCGACTCTC

Function


GO: NA

KEGG: NA

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU822907 lncRNA downstream 20963 55764323 ~ 55764554 (-) True G724398
TU822863 lncRNA downstream 61309 55724017 ~ 55724208 (-) True G724373
TU822862 lncRNA downstream 62031 55722977 ~ 55723486 (-) True G724372
TU822861 lncRNA downstream 63099 55722103 ~ 55722418 (-) True G724371
TU822860 lncRNA downstream 64193 55721084 ~ 55721324 (-) True G724370
TU822916 lncRNA upstream 1553 55793038 ~ 55793818 (-) True G724406
TU822939 lncRNA upstream 34550 55826035 ~ 55826459 (-) True G724416
TU823110 lncRNA upstream 63994 55855479 ~ 55857407 (-) True G724584
TU823123 lncRNA upstream 76714 55868199 ~ 55868491 (-) True G724594
TU823124 lncRNA upstream 77068 55868553 ~ 55868787 (-) True G724595
XM_021613040.2 mRNA downstream 11344 55769426 ~ 55774173 (-) False LOC110530175
XM_021613039.2 mRNA downstream 11344 55770348 ~ 55774173 (-) True LOC110530175
XM_021613036.2 mRNA downstream 21464 55730434 ~ 55764053 (-) False LOC110530174
XM_021613037.2 mRNA downstream 21464 55730434 ~ 55764053 (-) True LOC110530174
XM_036985738.1 mRNA downstream 21596 55730434 ~ 55763921 (-) False LOC110530174
XM_021613041.2 mRNA upstream 8423 55799908 ~ 55814343 (-) False LOC110530176
XM_036985739.1 mRNA upstream 8423 55799908 ~ 55814928 (-) False LOC110530176
XM_021613042.2 mRNA upstream 9943 55801428 ~ 55814348 (-) True LOC110530176
XM_021613046.2 mRNA upstream 23899 55815384 ~ 55839341 (-) True LOC110530178
XM_021613047.2 mRNA upstream 81468 55872953 ~ 55896342 (-) False LOC110530179
TU822777 other downstream 139503 55635538 ~ 55646014 (-) True G724287
TU822429 other downstream 388632 55396624 ~ 55396885 (-) True G723966
TU822417 other downstream 407741 55377281 ~ 55377776 (-) True G723955
TU821231 other downstream 1503539 54281685 ~ 54281978 (-) True G722864
TU821220 other downstream 1533971 54251114 ~ 54251546 (-) True G722854
TU823541 other upstream 328718 56120203 ~ 56128288 (-) False G724943
TU823623 other upstream 428031 56219516 ~ 56232939 (-) True G725007
TU823714 other upstream 583168 56374653 ~ 56386516 (-) False LOC110530186
TU823713 other upstream 591644 56383129 ~ 56386516 (-) True LOC110530186
TU823957 other upstream 796858 56588343 ~ 56589271 (-) True G725280

Expression Profile


TU822909 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.8.
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TU822909 Expression in each Bioproject

Bar chart with 19 bars.
TU822909 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15.
End of interactive chart.