RNA id: TU822720


Basic Information

Item Value
RNA id TU822720
length 3966
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G724237
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 55815386 ~ 55819692 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTCTGACAATTTGCTTTTTAATTGTTTTGTTAGCATGATTAGCTTTTACAAATATGCTCCCAGGTTACAGTTTCAACAGCATATTACATTGAGGCACTCCCATAAAGGTTTTATTATTATATCAAAAGTGCTGACTAGTAGCCGACAGCAGCATAAAAGGCTAGAGAGTACAGTAAACATCAGAGGCACTTGTATCTTCAGGAACATTTAACATTTAAGATCAGAGATTCAATTCAAAAGTCTACTTTTCGGCTGGTTTCTTTCTCTCTAAATGACATCATTAGTATATATTCAGCTGTGTAAGGAAACGTTATGAGCAAACATATGTTTTACAGTATTAGCCACATCCTTACATTGAGAATATATTGAGGATTATCCAAATACAAGGCTCTGGTTTTAGCATCTCagaagcattttactgttagttgAATGTTTTGTGCAAAGTTGGTTTTCTTCTTCTCTTGTCATGGAACGTGCAGGTTTGCTGAGTCTTGCATGGTGTATTTTTACACAAACTGTTCAGGTTTCTCCATACTTGTACTTGAAGCTGTGGGGAATGTAAAAGAAAATGAAACACATTTACCATATCACCTCATATCACCTCAGTTAGGACTACTTCAGATTAGTTGTGCTATGTTTATATTAATGTGACTCCTGAAAATAACCTCATGACAAAAGTAtgggacagggttgtgttcagtatGACAGAACGGTGTGCAACATTGAATTCAATGGAAATGGTAGAAGAGCCCAGTTAAAAACAGGTTGTGATTATGGTGGCCCAGAGGGCAGTTACCATATGGTGGGGCATATTGACCACACGGTCACGCAATGTAGTAAACGTTGAAGAGAACCGAACGCACCCCAGCTCTTTCCGTGAAGTTTGGTAATACCCACCTTCCCATAGCCTACTCACCAAGCAGACACAGTTGTTAGGAAAAAGACTGGCTGAACCAACCACACGACTGGTGAGCTAAGATTGGTGTATGTCCTCAGTTGTGTCAAAAGCATATTAGTTCGGGAGACATCCGTGTCTAATGATCTGATTGATGTCTGGACCGTTAAGATCATTAAGGTCCAGACcgtccactgtctgtctgtgtgctcagAAAAATTATGAGAGGTGACAGAGAGGTTGTTAGCACTGTCTGTCACATGGGGTGAGAGTGTTGTTAGACACATggttgtgtgcgtgtatgtgtgtgtgtgtagtgttggtgTGATGACATGCATTAATGATAAATAAAGCAAACATTGAACAAATACACAAAAAGAGttcagcagcacacacacacatacacacacaatcaaacagtTCATTGTTACACAAGAGAAGTAAGCCAGCTAATAATGAACAAATTATTGTTTAAGTTACAGGGCAAGCAATCATGCATACTACTGTAAGTATACAGAGGACAGTCATGGCATACCAGCATTGTAATGTAGAAAAGAGATTCtagaaaacacacatacaaataatTAATATTAAATTAGTACAAAACAATTATTTAGTCAGAGCGTAATTTGATTTGCAATATACATTCACACTAGTGATTTACAAAATGTCAGTAAAAAAGTCAATTTTATCTTTGTTCCCCAAAAGCAATAAACATAAAAAAtatcaaattatattttacatATTATACAAACAGTCAAGATCCCTTTGGCATCACGTAGGAATCTTAAGGCTACTTGCGTAACCCCGGGTCTCTGATATTATGAGTGAGATACATCACGAGGGATTCCCCGGAAACTCATTAGCTCTAAGAACCAATCAAACATGTCTGTCGGAGAGAGACAGGTCAAATTATGAAGGTATGCCTAACGAGCTGCATCGCATATCTCCTGTAAGGAGATGCCCTTGAACAGCGCCCAAAAAGTAGCCATACCTGTGGTTAAAGGTCTTCACGGCTCCAAAAAGTTGAACCCATTCCGAAATGGACCTAGGGCTTTCCTACCCAGACCCACTATGCataaatgcatttaaaaaatatagagACCCATTCCAAAGGGACGCGAGGAAAACTAGACCTGTTCCATATAGAAATGGTCGGATTCAGACCCGGTTCAAGTGGGGGAAGCAGCAGAAAAAGTCATTTtttaagctactttattaactgGAGCTGATAAAGCACAAGAGGATCTTATCTTGTTTCTATACAGTGAGCGTGTAGAAGGCAAAAACTGTCAGATTGGCtaatagcttctaccccaagactatcaggctgctgaatagccattAGGCAGTGTGGCTCTCGACCGATAAGCAGTGAAAGCTAGGATGGCCGGTCTAGTCAACGCGGCACGGTAGTGGGTTGAGCTAAATGAGAAAGCGAGCTAGTAATTGTACCCTTCCAGGTAGAAAAACCAGTCGGTAGAATAGCTAGCCTTGACTTCAATCATCAACACAAGCTCTCGTATGGATACACAACATCACTATGTATTTATACAGTGATAAATTGTGATTAGAATGAGAGTTTCAGGTCACTCTGTGTTGCAATGGCTACGACAAAGAGAAACTGATGCAGTGAAGAAGCCAAGTAACCAGCACACAGTTCAACACACTAGCCAGCCAATGAAAGACCTCAAAAGTGCTGTCAGTCAAAGCATATAAAGTGAACTTTGTTAGTTACAGTAGCGTCAGCAGTTGCAGGTTGGTTACATGAGCATGCAGCAGGGCTTTGTTCTCTTTTTAATCTTTTTAATCTTTCTGATACCTGGGGCAGAGTGCTTCTCTGTCCCGTCCTCGTCGGACTGTCCGTCTGAATACAGGTAGTGTGACTCTTTGGCCTGTTGACCAGGATAGACCACATTCCTTGATGCTGTGTACGGTGATGCATTGTTTGAGTTAAAATTAGCTGTGGGCTCTGCCATGTATTTGATTAAGTTCTGTTGAGGTTGACAGTGATGGTAGCCCCGGTTGTTATAGCCATCCGCGGTGTAGGTGTTAAACTGAGGGTTACTCTCGTCCACCCCATCCTCGTCGCCAATGACGACAAGCTCGGCCCGGATGGATCCTTCATATCCAAGGCCACGTCCACTGCCATCCTCTGCGGTCTGGTAGCCCATAAAGATGGCGGTGACAGGCTCGGACGTGTCCATGGTGTTCAGGATACTGAAGTGCGTGTCTTCCTGGTAGATCGGAGACGGCCTCAGGTCCATTTCAACTGATGAGTCGTAAAACATCCCTCCTCGCGGGTTCTCTCTAGGGCTATGGTAGAAGTCGTCGGTGGGGAACCCTTTCTCCACACCATAAGAGAAAGGATTCTGGTTATACCCGTTGTTTGGCTGGTAGTACTCTTCATCCTGCCTGCCAATGAAATAATGGACTGGAATGTGAGGGGAGGAGGAAAGAATCTCCAGCCCTGAGTTGTGGACTCCGTCAATATAGTGGAGCTCCTTCCTGGAGAGGACATCACGCTTATACGACTCTTGCTGATACCCATTCCCATTGGTTTCGTGGATGACTTTAGCATTACTCTGTTGGGGTCTGTTGGGGACTGAGGCCCTCCAGCTGCAGGTGTTGGAGAATGCAGGCACTGATTCCTGGTGGCCCCGGTGGTCTTTTGGGAAAGCACCGCTTTGAGGCATCTTCTGCACTATACCCTTTCTGAGCTGCTCCGCCACCTCCATAGGGCTGAGCTCATGGTGGCCCCGAGAGCCACGGGGGGTGGAGAATGCAGGTAATGTTGGCTTCTGGTGGCTCTGTGGGCCACAGTTGGTGGAGAATGCAGACACTGATTCCTGATGGCCTTGGTGGCCCAGTGGGCCGCTTTGAGACTTCTTCTGCTCTGTAGCTGCTCTGAGCAGAACCTCCACCTCCATAGCGCTGAGCTCGTCCACTCTGTTAGAACCATCCCCCAGCTGAGACTCGGCAGACCGCAGGGCATAGACAGACTTGCGGCCGTCGTCATAGACTTTGACCCCTCTCTGCTGGAGCACCTGGGGGGTGACAGTGGATGTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU822674 lncRNA upstream 74839 55739739 ~ 55740547 (+) True G724192
TU822673 lncRNA upstream 76235 55738442 ~ 55739151 (+) True G724191
TU822546 lncRNA upstream 91130 55723489 ~ 55724256 (+) True si:ch211-267e7.3
TU822633 lncRNA upstream 146828 55668217 ~ 55668558 (+) True G724154
TU822631 lncRNA upstream 149023 55662590 ~ 55666363 (+) True G724152
TU822951 lncRNA downstream 26709 55846401 ~ 55846617 (+) True G724428
TU822964 lncRNA downstream 34746 55854438 ~ 55854956 (+) True G724441
TU822974 lncRNA downstream 49294 55868986 ~ 55869239 (+) True G724451
TU822978 lncRNA downstream 53348 55873040 ~ 55879674 (+) True G724454
TU822980 lncRNA downstream 62887 55882579 ~ 55882942 (+) True G724456
XM_021613045.2 mRNA upstream 14742 55786481 ~ 55800644 (+) True frrs1a
XM_036985735.1 mRNA upstream 91115 55710162 ~ 55724271 (+) False si:ch211-267e7.3
XM_036985736.1 mRNA upstream 91115 55710162 ~ 55724271 (+) False si:ch211-267e7.3
XM_036985737.1 mRNA upstream 93581 55710156 ~ 55721805 (+) False si:ch211-267e7.3
XM_036985731.1 mRNA upstream 132464 55632302 ~ 55682922 (+) False LOC110530172
XM_036985741.1 mRNA downstream 96213 55915905 ~ 55950754 (+) False LOC110530181
XM_036985740.1 mRNA downstream 96213 55915905 ~ 55953989 (+) False LOC110530181
XM_021613048.2 mRNA downstream 96216 55915908 ~ 55978796 (+) True LOC110530181
XR_002474488.2 mRNA downstream 250287 56069979 ~ 56075431 (+) True LOC110530182
XM_036985742.1 mRNA downstream 294262 56113954 ~ 56250195 (+) True LOC110530943
TU822550 other upstream 97149 55710240 ~ 55718237 (+) False si:ch211-267e7.3
TU822189 other upstream 355266 55459696 ~ 55460120 (+) True LOC110530939
TU821992 other upstream 678755 55134030 ~ 55136631 (+) True LOC110530153
TU820675 other upstream 1145272 54624174 ~ 54670114 (+) True LOC118965528
TU820345 other upstream 1887427 53926217 ~ 53927959 (+) True rps28
TU824284 other downstream 1163878 56983570 ~ 56984285 (+) True G725573
TU824563 other downstream 1649180 57468872 ~ 57477729 (+) True LOC110530213
TU824624 other downstream 1693914 57513606 ~ 57515394 (+) False G725878
TU824625 other downstream 1693914 57513606 ~ 57515394 (+) True G725878
TU824655 other downstream 1735031 57554723 ~ 57555482 (+) True G725907

Expression Profile