RNA id: TU824030



Basic Information


Item Value
RNA id TU824030
length 211
lncRNA type read_through
GC content 0.49
exon number 2
gene id G725352
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 56648080 ~ 56692460 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


agaCAGAGAAagagagagagagagagacagagagacagagagacagagagacagagagacagagagacagagagacagagagagagagagagagagagagagacagagagagagagagagagagagacagagacagagagagagagagacagagagacagagagacagagagacagagagagagagagacagagagagagagagagagaga

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU824017 lncRNA upstream 8455 56639328 ~ 56639625 (+) True G725340
TU823985 lncRNA upstream 33686 56613962 ~ 56614394 (+) True G725308
TU823970 lncRNA upstream 39447 56608489 ~ 56608633 (+) True G725293
TU823859 lncRNA upstream 48369 56599466 ~ 56599711 (+) True G725199
TU823854 lncRNA upstream 54898 56592883 ~ 56593182 (+) True G725194
TU824133 lncRNA downstream 86871 56779331 ~ 56779681 (+) True G725438
TU824135 lncRNA downstream 88439 56780899 ~ 56781196 (+) True G725440
TU824105 lncRNA downstream 90987 56783447 ~ 56784547 (+) False G725411
TU824106 lncRNA downstream 90987 56783447 ~ 56784547 (+) True G725411
TU824265 lncRNA downstream 262515 56954975 ~ 56955181 (+) True G725554
XM_036985750.1 mRNA upstream 43915 56601898 ~ 56604165 (+) True tyw3
XM_021613071.2 mRNA upstream 72533 56563862 ~ 56575547 (+) False LOC110530195
XM_021613081.2 mRNA downstream 305968 56998428 ~ 57002561 (+) True LOC110530204
XM_036985763.1 mRNA downstream 353320 57045780 ~ 57079445 (+) True LOC110530206
XM_021613084.2 mRNA downstream 389086 57081546 ~ 57086615 (+) True LOC110530207
XM_021613089.2 mRNA downstream 415743 57108203 ~ 57130512 (+) False asph
XM_036985765.1 mRNA downstream 415743 57108203 ~ 57130512 (+) False asph
TU822550 other upstream 929843 55710240 ~ 55718237 (+) False si:ch211-267e7.3
TU822189 other upstream 1187960 55459696 ~ 55460120 (+) True LOC110530939
TU821992 other upstream 1511449 55134030 ~ 55136631 (+) True LOC110530153
TU820675 other upstream 1977966 54624174 ~ 54670114 (+) True LOC118965528
TU820345 other upstream 2720121 53926217 ~ 53927959 (+) True rps28
TU824284 other downstream 291110 56983570 ~ 56984285 (+) True G725573
TU824563 other downstream 776412 57468872 ~ 57477729 (+) True LOC110530213
TU824624 other downstream 821146 57513606 ~ 57515394 (+) False G725878
TU824625 other downstream 821146 57513606 ~ 57515394 (+) True G725878
TU824655 other downstream 862263 57554723 ~ 57555482 (+) True G725907

Expression Profile