RNA id: TCONS_00035765


Basic Information

Item Value
RNA id TCONS_00035765
length 2081
RNA type mRNA
GC content 0.53
exon number 7
gene id XLOC_018142
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 28885990 ~ 28932038 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCTGTTGAGAGGGAGGTGCTCGATCTGGCCCCGCTGCTCTCAACCTTCTCCGAGACGGATGATCAGAACAGAAAGGGCCGTCAGAATCTGTGAATATTTTACTTTACAACAGTCACCGCGTTTACAGTGACCCTGGGATTTCTAGTCGACGCAGCTCCATGGTGACCCGATACTGATTTTAAAGAGGAGGGCATTCACTGGTTCAGGACTCTTGCTGCACAAGCAGGACTGAAAGATGTGCAATGGAATGGTAGCGTGTGAGACGAGAGCCTCGCTCGCTCACGGGGTGGCCTCCACATCCCTGCTCCTCCTCCTCGCCATGCTCCCCACAGGCCAAGCTTCAGGTTGTCCCAGACCCACAGTTGTGCCTCATGGCCGTGGTAACCTGACGGAAATGAACCGTGGCTCCTTCTCTGTTGGCACGCTGCTCCAGTACAGTTGTGATCCAGGATACACGTTGGACGGCGTAAGCATGATCTCATGCACCGTCACTGGCCAATGGTCCTCTAACCCACCTCGCTGCATCAAAAATGATGGTATGTATGATGTCTGCCAGCCACCAAGTGAGCCAGAAAACGGAGGGTACAACTGCCACCCGTCGCCATGCCACAGACTGACCCAGGGTACCGTGATTGAGTACTTTTGTGATGAGGGTTACATCCTGAAAGGAGGCTATCAGTTCCGAACCTGTGAAAGCGGAGAGTGGAATTCGCCCATGCAGATCAGCTGTCACCCTGTGCAAGGGGAGGAGCAGCACTCTTCATTGCCCATGCCAGCTCTCTCTATTGTGGCCTCTACTGCTAGTTCTGTTGCCCTCATCCTTCTGCTGGTGgtgctgtttgttttgcttcaGCCAAAACTCAAGTCCTTCCATCACAGCCGCAGCCGGGAGCAGGGTGTGTCAGGACAGCACTCCTCCATGATGGTGGGGGGTGTTCAGGTGTCGCTGCCCTCCTATGAAGAGGCTGTGTACGGGGCGGGCGGCACTTCTGTACCTCCTCCAGAGTCGCGGGTGCAGATCGTGCTGTCGGAGGGCCCTCAAGCTGAGGCTTTGCATGAACCTCTGGAACAGGCTCAGGCGAGCTACAGTTTCCCTTCCACCTCCGCTGCTGCGAGCTCTTGTCACGCAGAGACTGTACTGGTTCACCAGGTGGCCTGTTCCTCCTctccctcctcctcttcctctcccTCCTGGGCTGTTGAGCAGCCTGGTGCCGCTGCGCCTCTCCACCGCCAGCAAAGCAGCGAGAGCAGCGACCAGCACAGCCTGCTTTCAGTCACCTCTGCTGAAGACTATGGCGATGATATTCCATTGCTAAAGGAAGCCTGAGTCTGTGTGCATTCGCCCCTCTCTCTGTCATCGCTGGCCAGGACTATAAAACCCTTAAAAGCTTCTCACCAAACACTCGCCCTTCCCACAGCCACCTGAAATGCGACCCGTCAGCTGTCCCTCAGCCAACAAAATTGCCCGCCTTGGGGGTCTGCAAGCTATGGGGTCCAACAGCTCTCTACACCGGACGACCCTTTAAAGGGATGCGCAAATGCTCAAGTTTAACACGTTGCACCTTTTCTTGCAGGTGTGCTCATAATCAGTTGCACTCACAGGCTTACCTCGTCACGGCGAGGATTCGCTAATTACAAACGAATGCATTCAGATTACGTGATGGACGTCCGCTCCGTCAATGACTGTGACCTCTTGCGAAAGAGAGAGTTCAGCAAGGATTTGCTAAGTCAGGCCCTTTTCTCTTTGATGCTGCATGTTCTGtgcaatttttttacattttcttttctgtttctACACGCGCGTACACACAGGAGCACGGCATCAAAGCATGACACACGGCACCATCTCCACGCTTTGACCTTGTGCGAGACGCAGGGTTAAACCCATTTGCATTGTACTGCATTCAAATACATGCTTGCCTTTTTTTATTTGTCCAGATGTACCTGTGCTGTGctctgcgtgtgtgtatgtgtgtttctgatGCCTGTGTGACTGTGGCTGTTGTGATTCGAAGAGGGCTGAAGCATCACCTAGGCTTTTTTTGTCCCCAAAATAGGAAACCTTTTTGGATACCTC

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-030131-8832 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SUSD6 (sushi domain containing 6).

Ensembl:

ensembl_id ENSDART00000153082

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036854 lncRNA downstream 24871 28860442 ~ 28863882 (-) True XLOC_018140
TCONS_00035758 lncRNA downstream 46263 28835369 ~ 28842490 (-) True XLOC_018139
TCONS_00036477 lncRNA downstream 246912 28638760 ~ 28641841 (-) True XLOC_018135
TCONS_00035738 lncRNA downstream 593649 28284780 ~ 28295104 (-) True XLOC_018131
TCONS_00036853 lncRNA downstream 619512 28267530 ~ 28269241 (-) False XLOC_018131
TCONS_00036478 lncRNA upstream 495037 29426938 ~ 29429462 (-) True XLOC_018147
TCONS_00035778 lncRNA upstream 541686 29473587 ~ 29474495 (-) True XLOC_018148
TCONS_00035793 lncRNA upstream 595290 29527191 ~ 29529831 (-) True XLOC_018153
TCONS_00035795 lncRNA upstream 691650 29623551 ~ 29626488 (-) False XLOC_018154
TCONS_00035796 lncRNA upstream 691657 29623558 ~ 29625984 (-) True XLOC_018154
TCONS_00035761 mRNA downstream 3924 28876736 ~ 28884829 (-) False XLOC_018141
TCONS_00035763 mRNA downstream 3925 28878254 ~ 28884828 (-) True XLOC_018141
TCONS_00035759 mRNA downstream 3953 28869969 ~ 28884800 (-) False XLOC_018141
TCONS_00035762 mRNA downstream 3953 28877867 ~ 28884800 (-) False XLOC_018141
TCONS_00035756 mRNA downstream 46190 28833640 ~ 28842563 (-) False XLOC_018139
TCONS_00035766 mRNA upstream 14808 28946709 ~ 28956303 (-) True XLOC_018143
TCONS_00035768 mRNA upstream 104427 29036328 ~ 29052391 (-) False XLOC_018144
TCONS_00035767 mRNA upstream 104427 29036328 ~ 29052391 (-) False XLOC_018144
TCONS_00035769 mRNA upstream 105723 29037624 ~ 29051696 (-) False XLOC_018144
TCONS_00035771 mRNA upstream 296436 29228337 ~ 29229854 (-) True XLOC_018145
TCONS_00035760 other downstream 12879 28871885 ~ 28875874 (-) False XLOC_018141
TCONS_00035753 other downstream 46182 28832762 ~ 28842571 (-) False XLOC_018139
TCONS_00035747 other downstream 276431 28611272 ~ 28612322 (-) True XLOC_018136
TCONS_00035726 other downstream 1577138 27308416 ~ 27311615 (-) True XLOC_018122
TCONS_00035722 other downstream 1662875 27224812 ~ 27225878 (-) True XLOC_018121
TCONS_00035770 other upstream 115282 29047183 ~ 29050045 (-) True XLOC_018144
TCONS_00035788 other upstream 563399 29495300 ~ 29495435 (-) True XLOC_018151
TCONS_00035811 other upstream 1440762 30372663 ~ 30372883 (-) True XLOC_018166
TCONS_00035812 other upstream 1441306 30373207 ~ 30373427 (-) True XLOC_018167
TCONS_00035813 other upstream 1441964 30373865 ~ 30374084 (-) True XLOC_018168

Expression Profile

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