RNA id: TU824624


Basic Information

Item Value
RNA id TU824624
length 1730
RNA type TUCP
GC content 0.42
exon number 3
gene id G725878
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 57513606 ~ 57515394 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTTAAATAGCTTTAATAAAGTGACAAACATACAAAGTAAAGTGATAAACAAGTGATAAAAATCATTCATACATATCCGGTTCAATGTACAATTCTGTCCCCTCAAATcataatacagtatacagtatacacaaaAGTGCACAAAGTGAACACATTTCCTCACTGTACACATTTGTTTTTACCGTATTGCACCCAGAATGTGTAACTGGATCAAAATAACATTTATTCAAAACAGATGGACCAAAGGAAAAGTTATTGATAGCTGTTGACTAAATGCAACCGACAGCTCTACACAAATCTAGTTCTAGTTGAAGTCGTTTTTTaaaaattttacccctttttctccccaaatgCGTGGTAtacaattgtttagtagctactatcttgtctcatcgctacaactcccgtacgggctcaacgaaggttgaaagtcatgcgtcctccgatacacgacccaaccaagccgcactgcttcttaagcgccatccaacccggaagccagccgcaccaatgtgtcggaggaaacactgtgcactgcgcccagcccgccacaggagacgCTGGTGAGCTATgggacaaggatttccctaccagccaaaccctccctaacccggacgacgctaggccaattgtgcgtcgccccagttacgacagagcctgggcgcgaacccaaggtctctggtggcacagctggtgctgcagtacagcgcccttaaccactgcgccacccgggaggcccagttACAGTAGTTTTTAGCTATCGAGCGTGAACAccTCTGTCTGTTTTGACATAGGCTGAAAAGCTAAGCCTGAAAGGCATAGGCACCGGTAGATAAGTGAGGAAATACAAAGGTGAGGAAATACACAATTATAAAGTGCATAAAACTGTCTTCATATTCTTTTCTTGTGGTTAACTAGGAACTACTTCAAGAGTTCAAGTCACACACACAACAGTAAGTTATACAAATTGGAATGTCACAGTTCCTGTCATATTATAAATATTTGGTAGGCTACAATCCTCCTGGGTCTATAGGAATGTGGCCTGTTGGAAGAAGGCCCAGGGAGAAAGGGGGACCAGAGAGTTGGACGGACAAGGGTacaaaagtttggggccacttaagaaatatccttgtttttgataaatttgctttttttttgtcccttaaaataacatcaaattgatcagaaatgcagtgtagacattcttaatgttgtaaatgactattggagctggaaattgataattttttaatggaatatctacataggcgcacagaggaccattatcagcaaccatcactcctgtgttccaatggcacgttgtgttagctaatcaaagttcataattttaaaaggctaatttatcattagaaaacccttttgcaattatgttagcacagctgaaaactgttgtgcttatTAAAGACGCAAtagaactggccttctttagactagttgagtatctggagcgtcagcatttttgggttcgattacaggctcaaaaatggccagaaacaaagacctttcttctgaaactcgtcactttattcttgttctgagaaatgaaggctattccatgtgagaaattgccaagaaactgaagatctcgtacaactcccttcacagaGCAGTCATCAGAGGTGGATGAGCGGAGGTGGGTTGAGTTTTAGAGGGCCTGGTAGTCTTTTCCTGATTGTGTTTCTGTGACATTCTGATAGTAGTGGACAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU824618 lncRNA upstream 6446 57506661 ~ 57507160 (+) True G725872
TU824612 lncRNA upstream 10016 57500533 ~ 57503590 (+) True G725869
TU824559 lncRNA upstream 94929 57418357 ~ 57418677 (+) True G725818
TU824550 lncRNA upstream 105194 57408074 ~ 57408412 (+) True G725809
TU824329 lncRNA upstream 370905 57136832 ~ 57142701 (+) False G725615
TU824634 lncRNA downstream 9452 57524846 ~ 57529724 (+) True G725886
TU824640 lncRNA downstream 20844 57536238 ~ 57536464 (+) True G725892
TU824643 lncRNA downstream 23899 57539293 ~ 57539548 (+) True G725895
TU824653 lncRNA downstream 34396 57549790 ~ 57550018 (+) True G725905
TU824654 lncRNA downstream 37444 57552838 ~ 57553144 (+) True G725906
XM_036985771.1 mRNA upstream 34751 57421244 ~ 57478855 (+) False LOC110530213
XM_036985770.1 mRNA upstream 34751 57421246 ~ 57478855 (+) False LOC110530213
XM_036985769.1 mRNA upstream 34751 57421249 ~ 57478855 (+) False LOC110530213
XM_036984512.1 mRNA upstream 151793 57339585 ~ 57361813 (+) False car8
XM_036985773.1 mRNA downstream 42634 57558028 ~ 57565135 (+) False LOC110530217
XM_036985772.1 mRNA downstream 42634 57558028 ~ 57572376 (+) True LOC110530217
XM_021613104.2 mRNA downstream 57257 57572651 ~ 57582193 (+) False LOC110530216
XM_036985774.1 mRNA downstream 82441 57597835 ~ 57625254 (+) False eif4g1a
XM_036985776.1 mRNA downstream 82441 57597835 ~ 57625254 (+) False eif4g1a
TU824563 other upstream 35877 57468872 ~ 57477729 (+) True LOC110530213
TU824284 other upstream 529321 56983570 ~ 56984285 (+) True G725573
TU822550 other upstream 1795369 55710240 ~ 55718237 (+) False si:ch211-267e7.3
TU822189 other upstream 2053486 55459696 ~ 55460120 (+) True LOC110530939
TU821992 other upstream 2376975 55134030 ~ 55136631 (+) True LOC110530153
TU824655 other downstream 39329 57554723 ~ 57555482 (+) True G725907
TU824799 other downstream 337618 57853012 ~ 57853632 (+) True LOC118965533
TU826058 other downstream 841645 58357039 ~ 58358135 (+) False G727161
TU826259 other downstream 1131465 58646859 ~ 58674005 (+) True G727348
TU827009 other downstream 1465537 58980931 ~ 58981271 (+) True G728057

Expression Profile