RNA id: TU824643


Basic Information

Item Value
RNA id TU824643
length 256
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G725895
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 57539293 ~ 57539548 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccccagctctgtcaggaggaatgggccaacttcacccaacttattgtgggaagcctgtggaaggctacccgaaatgtttgacccaagttaaaccattttaaaggcaatgctaccaaatactaattgggtgcatgtaaaattctgacccactgggaatgtgatgaaagaaataaaagctgaaataactcattctctctactattattctgatatttcacattcttaaaataaagtgatgatcctaactgacctagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU824640 lncRNA upstream 2829 57536238 ~ 57536464 (+) True G725892
TU824634 lncRNA upstream 9569 57524846 ~ 57529724 (+) True G725886
TU824618 lncRNA upstream 32133 57506661 ~ 57507160 (+) True G725872
TU824612 lncRNA upstream 35703 57500533 ~ 57503590 (+) True G725869
TU824559 lncRNA upstream 120616 57418357 ~ 57418677 (+) True G725818
TU824653 lncRNA downstream 10242 57549790 ~ 57550018 (+) True G725905
TU824654 lncRNA downstream 13290 57552838 ~ 57553144 (+) True G725906
TU824620 lncRNA downstream 42108 57581656 ~ 57581766 (+) True LOC110530216
TU824660 lncRNA downstream 44711 57584259 ~ 57584527 (+) True G725912
TU824677 lncRNA downstream 58306 57597854 ~ 57600762 (+) True eif4g1a
XM_036985771.1 mRNA upstream 60438 57421244 ~ 57478855 (+) False LOC110530213
XM_036985770.1 mRNA upstream 60438 57421246 ~ 57478855 (+) False LOC110530213
XM_036985769.1 mRNA upstream 60438 57421249 ~ 57478855 (+) False LOC110530213
XM_036984516.1 mRNA upstream 177480 57339596 ~ 57361813 (+) False car8
XM_036985773.1 mRNA downstream 18480 57558028 ~ 57565135 (+) False LOC110530217
XM_036985772.1 mRNA downstream 18480 57558028 ~ 57572376 (+) True LOC110530217
XM_021613104.2 mRNA downstream 33103 57572651 ~ 57582193 (+) False LOC110530216
XM_036985774.1 mRNA downstream 58287 57597835 ~ 57625254 (+) False eif4g1a
XM_036985776.1 mRNA downstream 58287 57597835 ~ 57625254 (+) False eif4g1a
TU824624 other upstream 23899 57513606 ~ 57515394 (+) False G725878
TU824625 other upstream 23899 57513606 ~ 57515394 (+) True G725878
TU824563 other upstream 61564 57468872 ~ 57477729 (+) True LOC110530213
TU824284 other upstream 555008 56983570 ~ 56984285 (+) True G725573
TU822550 other upstream 1821056 55710240 ~ 55718237 (+) False si:ch211-267e7.3
TU824655 other downstream 15175 57554723 ~ 57555482 (+) True G725907
TU824799 other downstream 313464 57853012 ~ 57853632 (+) True LOC118965533
TU826058 other downstream 817491 58357039 ~ 58358135 (+) False G727161
TU826259 other downstream 1107311 58646859 ~ 58674005 (+) True G727348
TU827009 other downstream 1441383 58980931 ~ 58981271 (+) True G728057

Expression Profile