RNA id: TU824654


Basic Information

Item Value
RNA id TU824654
length 307
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G725906
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 57552838 ~ 57553144 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGAATTAGCCCTGTTTTTGCAAGAGCACCAAAATTGTCATGCAAATTGCTTCAAAAATTATGAGTTCATTCTCATTTTAGCGTACATGTCTGATATCTTCGCAGCTCTCAATCATCTCAATCAAAAGATGCAGGGCGGTGGAGTCAACATCATCGAAGCGAAGGAAAACATGAAGGCTTTTCAAAAAAAGCTACCGTTATGGAAACGACGAACAGAGAACGATAACTTCGCAAACTTACCCCTGCTGGACGACTGTGTAAGTAAGATCGAAGATGTATCTGGAATCGGAGACATTTCTGTACCCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU824653 lncRNA upstream 2820 57549790 ~ 57550018 (+) True G725905
TU824643 lncRNA upstream 13290 57539293 ~ 57539548 (+) True G725895
TU824640 lncRNA upstream 16374 57536238 ~ 57536464 (+) True G725892
TU824634 lncRNA upstream 23114 57524846 ~ 57529724 (+) True G725886
TU824618 lncRNA upstream 45678 57506661 ~ 57507160 (+) True G725872
TU824620 lncRNA downstream 28512 57581656 ~ 57581766 (+) True LOC110530216
TU824660 lncRNA downstream 31115 57584259 ~ 57584527 (+) True G725912
TU824677 lncRNA downstream 44710 57597854 ~ 57600762 (+) True eif4g1a
TU824701 lncRNA downstream 124707 57677851 ~ 57678662 (+) True G725949
TU824721 lncRNA downstream 169700 57722844 ~ 57723061 (+) True G725969
XM_036985771.1 mRNA upstream 73983 57421244 ~ 57478855 (+) False LOC110530213
XM_036985770.1 mRNA upstream 73983 57421246 ~ 57478855 (+) False LOC110530213
XM_036985769.1 mRNA upstream 73983 57421249 ~ 57478855 (+) False LOC110530213
XM_036984516.1 mRNA upstream 191025 57339596 ~ 57361813 (+) False car8
XM_036985773.1 mRNA downstream 4884 57558028 ~ 57565135 (+) False LOC110530217
XM_036985772.1 mRNA downstream 4884 57558028 ~ 57572376 (+) True LOC110530217
XM_021613104.2 mRNA downstream 19507 57572651 ~ 57582193 (+) False LOC110530216
XM_036985774.1 mRNA downstream 44691 57597835 ~ 57625254 (+) False eif4g1a
XM_036985776.1 mRNA downstream 44691 57597835 ~ 57625254 (+) False eif4g1a
TU824624 other upstream 37444 57513606 ~ 57515394 (+) False G725878
TU824625 other upstream 37444 57513606 ~ 57515394 (+) True G725878
TU824563 other upstream 75109 57468872 ~ 57477729 (+) True LOC110530213
TU824284 other upstream 568553 56983570 ~ 56984285 (+) True G725573
TU822550 other upstream 1834601 55710240 ~ 55718237 (+) False si:ch211-267e7.3
TU824655 other downstream 1579 57554723 ~ 57555482 (+) True G725907
TU824799 other downstream 299868 57853012 ~ 57853632 (+) True LOC118965533
TU826058 other downstream 803895 58357039 ~ 58358135 (+) False G727161
TU826259 other downstream 1093715 58646859 ~ 58674005 (+) True G727348
TU827009 other downstream 1427787 58980931 ~ 58981271 (+) True G728057

Expression Profile