RNA id: TU824804


Basic Information

Item Value
RNA id TU824804
length 2136
lncRNA type antisense_over
GC content 0.39
exon number 1
gene id G726045
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 57858226 ~ 57860539 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atatatatggatattACTGAGATTCTGACTCTGTTTAAAGTAAGTCACAAGAAAGTGAGTCATTGTAGAGGCTCATGTAGCCAGCCTAGTCGGGCCTCAAAGGGAAATGGATCAGGGGTTTATTCGGAAGTCTTTGCCACAGTGTTTCATTTGGTTTCTCTTTTTTCACGGTTTAAACCGAATGTCCTTCAAAGCCAGACTAAATCAAGATCCTGAGAGTTCAGCCAGACAGCAGTCTACATTTCTGTTCATCCTCCTATCAGTTTCAAAACGCCAGTTAAAGGTACATGTAACGCACTGATAAGGACTGTTTTGAACAACTCTTTCTAGAAAACAGATCAAATAACACtgtttacttaaaaaaaaatatttaaaaaagattGAATCTAATGACCGAACAAAGCTTATTTTAGCGGTCAGTAAAATAGGTTGCTGTTATATGAATAGACAGCTTTAATAATGTGTACTCCTGTTTGGACTGTTGTCTAACAAAGCATTCATTAATTTACACAAGAGGGTAAATGAACGCAGCTAAAACAATAATGACCAGGATTTTCATGCAATGTAGCAGGGTTGGGGTTAATTCCATTCCAATTCTCCTAAATCACATATCCTAATCGTATCCATCCTATACACTACATACGTATTTTAAATAGACTACTTTTACCCTAATTACAGACATGGACAAAACTATGATCGTATAATAATGTAATACAATTATAATACACCATATTCAATACAGAAcataatatatagttgatgtaCATATGTTTAGTCATACCTCCACAGTAACATTCAGCATACTGCATACGCAGATAAATGGGAATTTTATTCTTCATGACGGCAGTTGAAACCAGTGGCGTGCTGTCTTAGCCCACATGCAGTGGAGTCCAAAATGATTGGATCCCTTAATAAAgctgagcaaaaaagactgtataaaatataaCATGTCATATGACCGGTTCCATTCTAAGTGCCAAAGGCATTTAGCAAACTATGATCAGGTGACATGAAAATAGAAGTGCATGGCCACAAAATACCTCATCTcgactgtaaaatatggtggtggatctttgatgttatggggctactttgattccactggtcctggggggCTTTGTTAAGAAGGTCAATGGCGTCATGAACTTTACCAATTACCAGGACATTTGAGCCAAAGACCTgtttgcctctgccaggaggctaaAACTTGgacgcaagtggatcttccagcaagataATAACCTCAAGAACACATCAAagtccacaaagaaatggttaactGACcaaaaaaatcaacattttgcctATGGCCAACTCAGTttctggacttgaaccccattggaAACCTGTGGTTtaaattgaagagggcagtccataaacGCAGACCAAGGAAATATTCTGGAAAGGTTCTGTTTAGAGGAGTGGTCAAAGATCCcttccaatgtgttctccaatctcataaaacatttcagaaaaaggctcagtgtcatTATTCTTGCAAGGGGTGGGTGCTGGACTATTGaaaaatggggatccatattctttttgagatttaaaaaaaatgacttgttaaacaaaatctctttctctgagcaattgtattagcatAAAATAATATGATTTTCTTTCTTTAAAATGTAGCATACAatacagctcagtatttgtataatttatttgattttatcTTTTTTGATCATCTATATCAAGGGATCCAATTACTTTCGACCTGACTGTATGTCTTAGCCCACGTACTGTGTGACTTATAGAGCTCATGAATGCCTATTGTAAGCAAACTGACTTCTCCTATTCAACCTACAATACCTTGTTGTCCTTCAACCTACCTTGTTGTCTAGGTATTCAACAATAAACACTCCTTTTTCCGTGTCGACGTCCTTTGTCCTCCAACAGTGGCAGAATGTCTCACAAACCTAGTCAGATTACAGCCAGTAACTTCCCAGTGGGCGAAAATGGATAAAacgtcatttcaaccagtttgGCTCAGTGTTTTTTCCTCCATGGGTCTCGTCAGAGCTCCGAGGTGCTGGTGGTGGCTCTCTTCTGGCTCATGGACCTCCTGAAGGTGAAGGTCTGCTTGGAGCTCCTCACCTCCGTGGTGATGAAGTAGTAACACAGAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU824789 lncRNA upstream 21762 57831389 ~ 57836550 (+) True G726031
TU824758 lncRNA upstream 83220 57766826 ~ 57775092 (+) True LOC110530223
TU824721 lncRNA upstream 135251 57722844 ~ 57723061 (+) True G725969
TU824701 lncRNA upstream 179650 57677851 ~ 57678662 (+) True G725949
TU824677 lncRNA upstream 257550 57597854 ~ 57600762 (+) True eif4g1a
TU824813 lncRNA downstream 5731 57866178 ~ 57867407 (+) True G726051
TU824815 lncRNA downstream 14142 57874589 ~ 57876276 (+) True G726053
TU824738 lncRNA downstream 16378 57876825 ~ 57877752 (+) True G725985
TU824741 lncRNA downstream 33363 57893810 ~ 57894357 (+) True G725988
TU824831 lncRNA downstream 41067 57901514 ~ 57902669 (+) True G726063
XM_036985787.1 mRNA upstream 3895 57850799 ~ 57854417 (+) False LOC118965533
XM_021613123.2 mRNA upstream 46885 57805385 ~ 57811427 (+) True LOC110530227
XM_021613119.2 mRNA upstream 60183 57766651 ~ 57798129 (+) False LOC110530223
trnap-agg-8 mRNA downstream 55553 57916000 ~ 57916071 (+) True trnap-agg-8
trnai-aau mRNA downstream 62103 57922550 ~ 57922623 (+) True trnai-aau
trnam-cau mRNA downstream 67366 57927813 ~ 57927885 (+) True trnam-cau
trnag-ucc-2 mRNA downstream 67928 57928375 ~ 57928446 (+) True trnag-ucc-2
XM_036985801.1 mRNA downstream 71848 57932295 ~ 58089891 (+) False LOC110530231
TU824799 other upstream 4680 57853012 ~ 57853632 (+) True LOC118965533
TU824655 other upstream 302830 57554723 ~ 57555482 (+) True G725907
TU824624 other upstream 342918 57513606 ~ 57515394 (+) False G725878
TU824625 other upstream 342918 57513606 ~ 57515394 (+) True G725878
TU824563 other upstream 380583 57468872 ~ 57477729 (+) True LOC110530213
TU826058 other downstream 496592 58357039 ~ 58358135 (+) False G727161
TU826259 other downstream 786412 58646859 ~ 58674005 (+) True G727348
TU827009 other downstream 1120484 58980931 ~ 58981271 (+) True G728057
TU827614 other downstream 1900028 59760475 ~ 59766358 (+) True LOC110530248
TU829329 other downstream 3180121 61040568 ~ 61042129 (+) True G730206

Expression Profile